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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Fra18g01520 ATGGATGCTTCAAGAACATCGGCTATTTGCTTCGGTATGGAATCTATAGGTCTTGAAACCGACATCCCGGGCTCAAAAACATATTGTAATCTAGGACTCAAACAAACATATAAGCACAATCATGGAAACCCGAAAGTTTTATCACTTCTTTCTTCACTGCTCGAAAGATCTGTCCAAATGAACGAGACATTACTTGAGAAAACACAAACTAAAGATGTCATTACGGTTTTTCATGGTTCAAGAGCACCAACACTTAGCATTAGAGAGTACGTTGATAGAATATTCAAGTACTCGCATTGCAGCCCCTCGTGTTTTGTTGTTGCACAGGTTTACATGGATCGGTTTATTCAGTGTGGAAATGTTAATTTGACTTCTCTTAGTGTTCATCGACTTCTCATCACTAGTATAATGCTTGCTGCCAAGTTCATTGATGACGCATTTTACAACAACGCGTATTATGCAAAAGTGGGAGGAGTAACAACTGCTGAATTAAACAGATTGGAGATGAAATTCCTGTTTGGCCTGGACTTTCGGCTCCATGTCAGCCTTCGTACGTTTGGCAGATACTGTTCCCAGTTGGAAAAACAAGATTCATGTGAGCTCCAAATGGAAAGACCGCCACGCGTGATTCACGCCCCTTGTGGACTCAAAGAAACCTGGTCTGGAAGTGATGACTCAAGTCCTTATGGCACAGCAGAGATACATATCGTATAG 714 41.46 MDASRTSAICFGMESIGLETDIPGSKTYCNLGLKQTYKHNHGNPKVLSLLSSLLERSVQMNETLLEKTQTKDVITVFHGSRAPTLSIREYVDRIFKYSHCSPSCFVVAQVYMDRFIQCGNVNLTSLSVHRLLITSIMLAAKFIDDAFYNNAYYAKVGGVTTAELNRLEMKFLFGLDFRLHVSLRTFGRYCSQLEKQDSCELQMERPPRVIHAPCGLKETWSGSDDSSPYGTAEIHIV 237
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Fra18g01520 237 PANTHER UNCHARACTERIZED 38 206 IPR013922 GO:0000079(InterPro)|GO:0019901(InterPro)
Fra18g01520 237 Gene3D - 33 211 - -
Fra18g01520 237 Pfam Cyclin 61 179 IPR013922 GO:0000079(InterPro)|GO:0019901(InterPro)
Fra18g01520 237 SUPERFAMILY Cyclin-like 91 180 IPR036915 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Fra18g01520 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
90704 Fra17g00791 Fra18g01520
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Fra Fra-Chr18:60088904 Fra7g01953 Fra-Chr7:76899384 dispersed
Fra Fra-Chr4:46097298 Fra18g01520 Fra-Chr18:60088904 transposed
Fra Fra-Chr17:26216967 Fra18g01520 Fra-Chr18:60088904 wgd