AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Fra18g01524 ATGGCGGAATCCAACCGCACCACCGTCCTCGTCACCGGCGCCGGTGGCAGAACTGGGCAAATTGTTTACAAGAAGCTGAAGGAGAGATCAGGGGAGTATATTGCACGAGGTCTGGTTCGAACGGAGGAGAGTAAGGAGAAGATCGGTGGAGAAGACGACGTTTTGATCGGAGATATAAGGAAAATAGAAACTGTTGTTCCTGCTGTTGAAGGCATTGATGCTCTTGTGATTCTCACCAGTGCTGTTCCTAAGATGAAACCGGGGTTTGATCCGACTAAAGGTGGAAGGCCCGAGTTCTATTTTGAAGAGGGATCATATCCTGAACAGGTTGATTGGGAAGGGCAGAAGAATCAAATTGATGCAGCTAAAGCTGCTGGAGTGAAGCAAATTGTTCTGGTTGGCTCCATGGGTGGAACAAACATTAACCACCCTTTAAACAGCCTGGGAAACGGGAATATACTGGTCTGGAAAAGAAAGGCTGAACAGTATCTAGCAGACTCTGGGATCCCATACACTATTATAAGGGCTGGAGGTTTGCAAGACAAGGAAGGCGGTGTACGAGAACTGCTTGTCGGAAAAGATGACGAGCTTCTTCAGACTGACACCAAAACCATAGCCAGAGCAGATGTCGCTGAAGTCTGTATTCAGGCATTGAAATTTGACGAGGCAAAGTTCAAAGCATTTGATCTTGCATCCAAACCCGAGGGAACTGGAACGCCAACAAAAGACTTCAAGAGCTTATTTGCCCAGGTCACTACTCGGTTTTAA 768 47.14 MAESNRTTVLVTGAGGRTGQIVYKKLKERSGEYIARGLVRTEESKEKIGGEDDVLIGDIRKIETVVPAVEGIDALVILTSAVPKMKPGFDPTKGGRPEFYFEEGSYPEQVDWEGQKNQIDAAKAAGVKQIVLVGSMGGTNINHPLNSLGNGNILVWKRKAEQYLADSGIPYTIIRAGGLQDKEGGVRELLVGKDDELLQTDTKTIARADVAEVCIQALKFDEAKFKAFDLASKPEGTGTPTKDFKSLFAQVTTRF 255
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Fra18g01524 255 CDD SDR-a5 8 230 - -
Fra18g01524 255 Pfam NAD(P)H-binding 13 219 IPR016040 -
Fra18g01524 255 FunFam Uncharacterized protein At5g02240 5 255 - -
Fra18g01524 255 Gene3D - 4 255 - -
Fra18g01524 255 PANTHER NITROGEN METABOLIC REGULATION PROTEIN NMR-RELATED 2 255 IPR044163 GO:0009507(PANTHER)|GO:0016491(InterPro)
Fra18g01524 255 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 7 233 IPR036291 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Fra18g01524 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Fra Fra-Chr11:79871077 Fra18g01524 Fra-Chr18:60146416 dispersed
Fra Fra-Chr18:32305254 Fra18g01524 Fra-Chr18:60146416 dispersed