AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Fra18g01546 ATGAGGACATTCTTTCCATCTGAATCTTGTAAAGAAACACATCTAAATGCTCTGAATCCGCAATCATGGCTGCAAGTTGAAAGAGGAAAGCTTTCAAAAGTCTCACCTCACTCCCCTTCCTCATTAGAATCTCTAATCAAAGTCCCCGACCCACCAATTCTTCCATTCTTTAAACCTGTTGATTATGTAGAAGTTTTAGCCCAAATCCATAAAGAACTAGAATCATGCCCTCCACATGAGCGCACAAACCTCTATTTATTACAGTTTCAAGTCTTTAAAGGCCTCGGTGACATTAAATTAATGAGAAGAAGCCTTAGATTAGCTTGGCTCAAAGCAAGTACAGTTCATGAACGGCTCATTTTTGGGGCATGGTTAAAATATGAAAAACGAGGTGAGGAACTTATATCGGATTTACTCTCGTCGTGTGGTAAATGCTCAAAAGAGTTTGGATTGATAGATATTAGTTCTGAGCTCCCGTCTGTGGTAAACGCTAGTTTAAATGATGGTGCAATGGTTGATCAAAAGAATAAGTTATCAGGAACTGTTTCCTTTCAAATTGGGGATGAAAAAATAACGTGTGATAGACAAAAGATGGCGACCCTTTCGCTTCCTTTTCGTTCTATGCTTAACGGATGTTTTCTTGAATCGGTTTCTGAAGACATAGATTTGTCAAAAAATGATATTTCACCAAGGGGTATGAAGGTGATAAGTGAATTTAGTTCAACGGGTTTTTTACCCGATTTATCAACAGAGCTTTTACTAGAAATTATGGTGTTTTCGAGTAAGTTTTGTTGTGAGAATCTCAAAGATTCTTGTGATAGGAAGCTTGCAAAATCCGTTTCATCAAGAAATGATGCGATTGAACTTATGGAATATGCTCTCGAAGAGAACTGTCCGGTTCTTGCTGCCTCTTGTTTGCAGGTTTTCCTTCAAGAACTCCCAGATTCTCTTAACGATGAACGGGTTGTTGACTTGTTGACCAGTGTTAACAGTTTGCATAGATCGATTATGGTGGGGTCCGCTTCGTTTTCACTCTACTGCTTATTAAGCCAGGTTGCTATGGATCTTGATCCGGGATCTGATAAGTCTGCTCTGTTTTTGGAACAATTAGTGGATTCTACGGAAAATAGTCGACAAAAGATGATGGCATATCATATGTTAGGATGTGTGAAATTACTCAAGAAAGAATATGACGAAGCCAAAAGAGTTTTTGAGGCTGCATTAACTGAAGGACACGTTTATTCTGTCATAGGTTTGACGAGAATAGGTCAAATTAAGGGTGAAAAGCATGAATCTTACAAGAAGCTTAGCTCGGTTATTTCAAATCACACTCCTCTTGGGTGGATGTATCAAGAAAGATCTTTATATTGTGAAAATAACGAAAAAAGATGGGAAGATCTTGAAAAAGCAACCGAATTGGATCCAACTTTAACGTACCCGTATATGTACCGTGCAGCTTCTTTAATGAAAAAGCAAAATGTTCAAGATTCACTCGCTGAAATTAACAAGATTCTTGGTTTCAAACTTGCGGTTGAATGTTTGGAACTGAGGTTTTGTTTCTATCTAGTTCTTGAAGATTATCAATCGGCTATTTGTGATGTTCAGGCTATTCTTACAATTTCTCCTGATTACCGGATGTTTGAAGGGCGGGTACCCGCCACACAATTTCAAACTTTAGTTCGTGAACATGTTCCAAATTGGACAACTGCAGATTATTGGTTGCAGTTGTATGATCGGTGGTCTGCTGTTGATGATATTGGGTCACTTTCTGTAATATATCAAATGCTCGAGTCTGAAACGGCTAAAGGAGTTTTATATTTTAGACAGTCTTTGCTTCTCCTCAGGTTAAATTGCCCGGAAGCAGCAATGCGAAGTTTACAATTGGCACGCCAACATGCATCAAGTGAACATGAACGTTTAGTTTATGAGGGTTGGATATTATATGACACGGGCCATTGTGATGAAGGGTTAAAAAAGGCTGAAGAATCTATTAGATTGAATAGATCTTTCGAGGCCTTTTTTCTAAAAGCTTATGCTTTAGCAGATTCTAGTCAAGATCCTGCTTGTTCTTCAACAGTCGTAGCGCTTCTTCAAGATGCCCTTAAATGCCCTTCTGACAGGCTTCGCAAAGGCCAGGCGTTGAACAATCTTGGAAGCGTTTATGTAGACTCTGGGAAACTAGACCTTGCAGCCGACTGCTACATTAACGCCCTTAAGATTCGACACACAAGGGCCCACCAGGGGCTTGCGCGTGTCCATTATTTAAAAAATGACAAGCCAGCCGCCTATGCAGAAATGACAAAACTGATTGAAAAGGCGCGGAACAATGCATCTGCTTATGAAAAAAGATCAGAGTATTGTGAACGTGAGCAGACAAAAGTAGATCTTGAAATGGTCACTCGTTTAGATCCTCTTCGGGTTTACCCCTACAGATATCGGGCAGCAGTTTTGATGGACAACCACAAGGAGAAAGAAGCGATAGCTGAGCTTTCAAGGGCGATCGCTTTCAAAGCAGACCTGCATTTATTGCATTTACGAGCAGCATTTCATGAACATATTGGGGATGTTGCGGGCGCCATGCGGGACTGTCGAGCCGCCCTCTCTTTTGACCCGAATCATCAAGAGATGCTTGAACTTCGGACCCGTGTAAACAGCCAAGAACCTTAA 2667 40.42 MRTFFPSESCKETHLNALNPQSWLQVERGKLSKVSPHSPSSLESLIKVPDPPILPFFKPVDYVEVLAQIHKELESCPPHERTNLYLLQFQVFKGLGDIKLMRRSLRLAWLKASTVHERLIFGAWLKYEKRGEELISDLLSSCGKCSKEFGLIDISSELPSVVNASLNDGAMVDQKNKLSGTVSFQIGDEKITCDRQKMATLSLPFRSMLNGCFLESVSEDIDLSKNDISPRGMKVISEFSSTGFLPDLSTELLLEIMVFSSKFCCENLKDSCDRKLAKSVSSRNDAIELMEYALEENCPVLAASCLQVFLQELPDSLNDERVVDLLTSVNSLHRSIMVGSASFSLYCLLSQVAMDLDPGSDKSALFLEQLVDSTENSRQKMMAYHMLGCVKLLKKEYDEAKRVFEAALTEGHVYSVIGLTRIGQIKGEKHESYKKLSSVISNHTPLGWMYQERSLYCENNEKRWEDLEKATELDPTLTYPYMYRAASLMKKQNVQDSLAEINKILGFKLAVECLELRFCFYLVLEDYQSAICDVQAILTISPDYRMFEGRVPATQFQTLVREHVPNWTTADYWLQLYDRWSAVDDIGSLSVIYQMLESETAKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHASSEHERLVYEGWILYDTGHCDEGLKKAEESIRLNRSFEAFFLKAYALADSSQDPACSSTVVALLQDALKCPSDRLRKGQALNNLGSVYVDSGKLDLAADCYINALKIRHTRAHQGLARVHYLKNDKPAAYAEMTKLIEKARNNASAYEKRSEYCEREQTKVDLEMVTRLDPLRVYPYRYRAAVLMDNHKEKEAIAELSRAIAFKADLHLLHLRAAFHEHIGDVAGAMRDCRAALSFDPNHQEMLELRTRVNSQEP 888
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Fra18g01546 888 Gene3D Tetratricopeptide repeat domain 791 887 IPR011990 GO:0005515(InterPro)
Fra18g01546 888 SUPERFAMILY POZ domain 182 279 IPR011333 -
Fra18g01546 888 Gene3D Tetratricopeptide repeat domain 352 548 IPR011990 GO:0005515(InterPro)
Fra18g01546 888 Gene3D Tetratricopeptide repeat domain 599 790 IPR011990 GO:0005515(InterPro)
Fra18g01546 888 SMART tpr-5 511 544 IPR019734 GO:0005515(InterPro)
Fra18g01546 888 SMART tpr-5 711 744 IPR019734 GO:0005515(InterPro)
Fra18g01546 888 SMART tpr-5 603 636 IPR019734 GO:0005515(InterPro)
Fra18g01546 888 SMART tpr-5 637 670 IPR019734 GO:0005515(InterPro)
Fra18g01546 888 SMART tpr-5 381 414 IPR019734 GO:0005515(InterPro)
Fra18g01546 888 SMART tpr-5 840 873 IPR019734 GO:0005515(InterPro)
Fra18g01546 888 PANTHER ETO1-RELATED 1 887 IPR044631 GO:0010105(InterPro)
Fra18g01546 888 SUPERFAMILY TPR-like 695 882 IPR011990 GO:0005515(InterPro)
Fra18g01546 888 Coils Coil 390 410 - -
Fra18g01546 888 Pfam Tetratricopeptide repeat 712 740 IPR019734 GO:0005515(InterPro)
Fra18g01546 888 Pfam Tetratricopeptide repeat 383 409 IPR019734 GO:0005515(InterPro)
Fra18g01546 888 Coils Coil 763 790 - -
Fra18g01546 888 ProSiteProfiles TPR repeat profile. 711 744 IPR019734 GO:0005515(InterPro)
Fra18g01546 888 SUPERFAMILY TPR-like 513 740 IPR011990 GO:0005515(InterPro)
Fra18g01546 888 Gene3D Potassium Channel Kv1.1; Chain A 174 319 IPR011333 -
Fra18g01546 888 SUPERFAMILY TPR-like 367 580 IPR011990 GO:0005515(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Fra18g01546 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
393617 Fra13g01335 Fra18g01546
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Fra Fra-Chr18:42832444 Fra18g01546 Fra-Chr18:60481429 dispersed
Fra Fra-Chr18:60481429 Fra13g01548 Fra-Chr13:44127569 transposed