AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Fra18g01563 ATGTCGAAGAATTCGTGGTGGATCGGCTTCGTGTTTGTTGTTTTATGCTTATCTTCTTCTGGGGTGTTTGCGATTGATGATTTTAATCAAGCATTTCCAATCATAGAACCCGATCCTGGTCATACAAAACTTCGTATTTCTAGTGAGGGACTGGAAGCTATCAGGAGAATAACCAATCCTATTGCAGCTGTTGCTGTGATTGGTCCATATCGTTCTGGAAAGTCATTTCTGCTTAATCAACTTCTTTCACTTTCTTGTAATGAAGGGTTTGGTGTTGGCCATATGCGTGACACTAAAACGAAAGGAATATGGGTATGGGGAACTCCAGTTGAAATGGATATTGATGGAGTGAAAACATCTGTATTTTATCTTGATACCGAGGGATTTGAAAGCATAGGGAAATCAAACGTCTATGATGACAGAATATTTGCTCTTGCTACAGTTTTGAGTTCCGTCCTTATCTACAATTTGCCTGAGACGATACGTGAAGCTGATATATCACGATTATCATTTGCTGTTGAGCTTGCTGAAGAGTTTTATGGAAGAGTCGAGGGGCAAGATGTGGCGTTTGAACCAGCAAAACTATTGTGGCTTATACAACGGGACTTTTTACAGGGAAAGTCTGTTAAAGAAATGGTTGATGAAGCTTTACGACGTGTTCCTAACTCTGATGGTGACAAAAATATTGATCAGGTCAACCAGATTCGAGACTCCCTGGCTATTATGGGTGACAATAGCACAGCTTTCAGCTTACCACAACCACATCTCCAAAGGACAAAACTTTGTGACTTGAAAGACGAGGAGCTTGATCCAAGTTATGTTTCAAAGAGAGAACAGTTGAAAGAAGTTGTTAAATCTGTTATCCGTCCCAAGATTGTACAGGGCAAATCACTTAACGGGAATGAGTTTGTAGCTTTTCTTGAAAAGATTTTGGAAGCTTTAAACAAGGGTGAGATTCCATCCACAGGGTCTCTTGTGGAGGTATTTAACAAGAAGATATTGGAGAGATGTTTAAAGTTATATGAGGATCGTATGACAAAAGTGATTTTACCGGTTTCTGAGGAGTCTCTACAATCCATCCATGAAGCTTCTAGAACCGAATCTTTGGAATCTTTTGATGAACAGCATTTTGGCCGTCATCATGCCAAGAAATCAGCTGAAACACTTGATGAAGATATTGAAAAGATGTTTAAGAATTTTGTGATGGCAAACCAATATCAATCTTCAAAATTGTGCGAGTCACTCTATACATCATGTGAGGATAAAATGGACCAACTTCAAGTACTCAGACTGCCTTCCATGGCCAAATTCAATGCGGGCTTTCTTCAATGCAACCAAAGTTTTGAAAAAGTGTGCGTCGGGCCTTCTAAAACCATATATGAGCAACGAATGGTGAAGATGATGGGAAAGTCAAAGTCTTTGTTTATAAAGGAATATAACCACAGATTATTTAACTGGTTGGTAGCCTTTTCACTTGTAATGGTGATTGTGGGACGTTTTATCATAAAATTCATTTTGCTTGAAATCGGGGCGTGGATAATGTTTATATTTTTGGAGACGTACACACGGATGTTTTGGTCACCTGAATCTCTTTATTACAACCCTGTTTGGCATGGCATTGTAGCAACTTGGGAAACACTTGTCTACAGCCCAATTCTTGATTTAGACAGATGGGCGATACAAATCGGATTCATTGCATCAATATTGTTAATATATTGGCGATGCTTTGCAAGAAGGAAACACGGGTCCCATTCATTGTTACCATTGTACAACAGCAGTTCAAAAGTTCGGGATAGATCAGAATAG 1806 39.2 MSKNSWWIGFVFVVLCLSSSGVFAIDDFNQAFPIIEPDPGHTKLRISSEGLEAIRRITNPIAAVAVIGPYRSGKSFLLNQLLSLSCNEGFGVGHMRDTKTKGIWVWGTPVEMDIDGVKTSVFYLDTEGFESIGKSNVYDDRIFALATVLSSVLIYNLPETIREADISRLSFAVELAEEFYGRVEGQDVAFEPAKLLWLIQRDFLQGKSVKEMVDEALRRVPNSDGDKNIDQVNQIRDSLAIMGDNSTAFSLPQPHLQRTKLCDLKDEELDPSYVSKREQLKEVVKSVIRPKIVQGKSLNGNEFVAFLEKILEALNKGEIPSTGSLVEVFNKKILERCLKLYEDRMTKVILPVSEESLQSIHEASRTESLESFDEQHFGRHHAKKSAETLDEDIEKMFKNFVMANQYQSSKLCESLYTSCEDKMDQLQVLRLPSMAKFNAGFLQCNQSFEKVCVGPSKTIYEQRMVKMMGKSKSLFIKEYNHRLFNWLVAFSLVMVIVGRFIIKFILLEIGAWIMFIFLETYTRMFWSPESLYYNPVWHGIVATWETLVYSPILDLDRWAIQIGFIASILLIYWRCFARRKHGSHSLLPLYNSSSKVRDRSE 601
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Fra18g01563 601 PANTHER GUANYLATE BINDING PROTEIN 31 552 - GO:0003924(PANTHER)|GO:0005525(PANTHER)
Fra18g01563 601 Gene3D - 26 294 IPR027417 -
Fra18g01563 601 FunFam Guanylate-binding family protein 295 427 - -
Fra18g01563 601 CDD GBP 55 284 - -
Fra18g01563 601 FunFam Guanylate-binding family protein 26 294 - -
Fra18g01563 601 Pfam Guanylate-binding protein, C-terminal domain 295 424 IPR003191 GO:0003924(InterPro)|GO:0005525(InterPro)
Fra18g01563 601 Pfam Guanylate-binding protein, N-terminal domain 43 281 IPR015894 GO:0003924(InterPro)|GO:0005525(InterPro)
Fra18g01563 601 SUPERFAMILY Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain 294 515 IPR036543 GO:0003924(InterPro)|GO:0005525(InterPro)
Fra18g01563 601 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 29 291 IPR027417 -
Fra18g01563 601 ProSiteProfiles GB1-RHD3-type guanine nucleotide-binding (G) domain profile. 58 178 IPR030386 GO:0005525(InterPro)
Fra18g01563 601 Gene3D - 295 429 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Fra18g01563 - -