AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Fra18g01576 ATGGCTGCCACAAATGAATTTATGCATCATTTATCTATGGCTGCCTGCGAATGGTTCTTGATGTTTCTGATGTACATTGATGCTGCATTGGGCTTTATCCTCACAAGATTTGCTCATCAATGTGAATTGCAAACCCCTTGCTTGTTTTGCTTCCGGTTTGATCATGTTTTTGGCGATAAACCCGATTATTATTTGAGTCACTTCTGCAATAATCATCGCGCTGAGGTTTCTTCTTTGGTATCTTGTAATCTTCATCATAAGCTCTCTGATGTAAGAGAAATGTGTGATGATTGTTTCATGTCAACGATGAAGCAAAAACAAGGGTACCCAAAACCTTTGTTGAATAGGAATCTTGTTCGTGCACCTTCAAGTACTGGGTCATGCTCGTGTTGTAAGAGACAGTGGAAACCAAAACCAAGAAGTAAGATCAAATTAGGGGTTCCCAAAGTAACTAGGCAACCTCCATTGCCACTAATTGCAGGTCGGGCCTGTGGTCGTTATCGCCGCCGGAATTATTTCAAAAAGGCTCGGGATAAGATTTCAGGAACCACGACTCCTTGCCATGTTGGAAATAATATCCATGTGGACGTTGACATGGACGCCTTATCTGATTCGGGTTGTGCTGACCTTAAGTTCAATTCGTGTTCAGATGCTGAATCTGGAGATTCGTTTTATGAGATTGAATGTGAAAATGAGGGCTTTGAAGATGATTCTTGTGTTATTATACGTCAAGTGGAACATTTCAAGAGTTTCTCTAATCTTGAGCCTTTTAAGAGTTTTTCTAATCTTGAGCCTTCACTACCGAATGGTACCCATAACGAGAGTGTAGTGAGTCCTCTGTCTTTTACATCCAATGGTTCAATGGGGCATGCTGTAAAAGAAAACGGGTCTCTAAAAGTTAGTACTGAAACAAGTTCATTCAATCAAGATTTGCCTTCCCCTAATGATCATGAAGGCTATGAATCTCCGAGCACGCATAGTGTAGGTGAAATCAAGGGTGAAAGTGACATGGAAAAGCTAAAACGACAGATGGAATATGATCAAGAACAGATTCGTGAATTAAGCAAGGAATTAGAGGAAGAAAGAACCGCGGCTGCTATAGCTGCTGAGGCACCTAGTTCTCCAGATAAACATGAAGGCTTTGATTCTCCAAGCACAGACAGTGTGGGTGATATCAAGGGTGAAAATGAAATGGAAAAGCTAAAACGACAGATGGAATATGATCATGAACAACTGCGTTTATTGCACAAGGAGTTAGAGGAAGAAAGAAACGCTGCTGCAATAGCTGCTGACGAGGCAATGGCCATGATTACAAGATTGCAAGAAGAAAAATCTGCTTTACATATGGAAGCGTTGCAGTATTTAAGAATGATGGATGAACAAGCAGAATATGATATGGAAGCTTTAGATAAGGCCAATGATCTTGTTACTGAGAAAGATAAAGAAATTCAAGATTTAGAAGCCGAGCTGGAATATTTCAGAAGCCGATACGAGGATGAATCGATCAATGGGAATGCTACAGTTAATTTCAAAGAAAATCATATGGGAAATGGGAAAATTGATTCTATATCTTCTTCTGGCTCAAAATCTATGAATACGTTAGAATCGAGGGCTAATAATCATGCGCTTTTAGACCTTGAAGATGAAAAGAAATACATTTTAAACTCTATATCAGAGTTGGAAAGGAAAGGTCACCAAATTTCTGATGGTAATAATGGTTTGTCACAACAAAATGAAACTCATACGGGTACCCTTGAGAATGAAATTTCAGATCTTAATGAATGGTTAGAAGCAGTTGAATCTGATCGGGATTTTCTTGAGCATGCTTGTAACACGGTCCAGAGTCACGTGGGAGTAGAGTTTATTCAAAAAATAGCTCAGCACTTGCATGATATGAGAAGGGTTAGGTTTGATAGAAGATGCCAAACTGTTGGTTGA 1938 39.53 MAATNEFMHHLSMAACEWFLMFLMYIDAALGFILTRFAHQCELQTPCLFCFRFDHVFGDKPDYYLSHFCNNHRAEVSSLVSCNLHHKLSDVREMCDDCFMSTMKQKQGYPKPLLNRNLVRAPSSTGSCSCCKRQWKPKPRSKIKLGVPKVTRQPPLPLIAGRACGRYRRRNYFKKARDKISGTTTPCHVGNNIHVDVDMDALSDSGCADLKFNSCSDAESGDSFYEIECENEGFEDDSCVIIRQVEHFKSFSNLEPFKSFSNLEPSLPNGTHNESVVSPLSFTSNGSMGHAVKENGSLKVSTETSSFNQDLPSPNDHEGYESPSTHSVGEIKGESDMEKLKRQMEYDQEQIRELSKELEEERTAAAIAAEAPSSPDKHEGFDSPSTDSVGDIKGENEMEKLKRQMEYDHEQLRLLHKELEEERNAAAIAADEAMAMITRLQEEKSALHMEALQYLRMMDEQAEYDMEALDKANDLVTEKDKEIQDLEAELEYFRSRYEDESINGNATVNFKENHMGNGKIDSISSSGSKSMNTLESRANNHALLDLEDEKKYILNSISELERKGHQISDGNNGLSQQNETHTGTLENEISDLNEWLEAVESDRDFLEHACNTVQSHVGVEFIQKIAQHLHDMRRVRFDRRCQTVG 645
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Fra18g01576 645 MobiDBLite consensus disorder prediction 287 322 - -
Fra18g01576 645 Coils Coil 543 563 - -
Fra18g01576 645 PANTHER MYOSIN-BINDING PROTEIN 2 302 369 IPR039306 GO:0017022(InterPro)
Fra18g01576 645 MobiDBLite consensus disorder prediction 368 392 - -
Fra18g01576 645 MobiDBLite consensus disorder prediction 287 335 - -
Fra18g01576 645 Coils Coil 337 371 - -
Fra18g01576 645 ProSiteProfiles GTD-binding domain profile. 396 494 IPR007656 -
Fra18g01576 645 Coils Coil 402 450 - -
Fra18g01576 645 Coils Coil 469 503 - -
Fra18g01576 645 Pfam Zein-binding 400 490 IPR007656 -
Fra18g01576 645 Pfam Zein-binding 339 370 IPR007656 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Fra18g01576 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
90881 Fra18g01576 Fra1g00664
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Fra Fra-Chr10:56527624 Fra18g01576 Fra-Chr18:61147172 dispersed
Fra Fra-Chr11:5621383 Fra18g01576 Fra-Chr18:61147172 dispersed
Fra Fra-Chr18:61147172 Fra7g03075 Fra-Chr7:88154493 dispersed
Fra Fra-Chr1:63440750 Fra18g01576 Fra-Chr18:61147172 wgd