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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Fra18g01579 ATGGCAACAGGCTGCAAAGGAAAGAGTTCATGGCCGGAGCTTGTAGGGGCAACCGGAGAAGTTGCGGCGACAACAATTGAGGAAGAGAATCCACACGTCAATGCTATTGTGTTATTGGATGGAACTCCCACCACTAGGGACTTAAGGTGTGACCGTGTGTGGGTGTGGGTCAACTCTAAGGGAGTGGTGATTCGAACGCCTATCATTACATGA 213 50.23 MATGCKGKSSWPELVGATGEVAATTIEEENPHVNAIVLLDGTPTTRDLRCDRVWVWVNSKGVVIRTPIIT 70
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Fra18g01579 70 Gene3D Trypsin Inhibitor V, subunit A 2 70 - -
Fra18g01579 70 SUPERFAMILY CI-2 family of serine protease inhibitors 4 69 IPR036354 -
Fra18g01579 70 ProSitePatterns Potato inhibitor I family signature. 11 22 IPR000864 GO:0004867(InterPro)|GO:0009611(InterPro)
Fra18g01579 70 PRINTS Potato inhibitor I signature 35 46 IPR000864 GO:0004867(InterPro)|GO:0009611(InterPro)
Fra18g01579 70 PRINTS Potato inhibitor I signature 10 23 IPR000864 GO:0004867(InterPro)|GO:0009611(InterPro)
Fra18g01579 70 PRINTS Potato inhibitor I signature 47 57 IPR000864 GO:0004867(InterPro)|GO:0009611(InterPro)
Fra18g01579 70 PANTHER PROTEIN, PUTATIVE, EXPRESSED-RELATED 4 69 IPR000864 GO:0004867(InterPro)|GO:0009611(InterPro)
Fra18g01579 70 Pfam Potato inhibitor I family 8 69 IPR000864 GO:0004867(InterPro)|GO:0009611(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Fra18g01579 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Fra Fra-Chr18:61190792 Fra18g01581 Fra-Chr18:61214126 dispersed
Fra Fra-Chr18:61190792 Fra18g01580 Fra-Chr18:61202196 tandem