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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Fra18g01585 ATGGCGAGCACATGTGAAGGAAAGAGTTCATGGCCCGAGCTTATAGGCACGAGGGGAGACGCAGCGGCTGTTACAATTGAAAGAGAGAATCCACGGGTCGATGCTATTATCGTCTTGGAGGGTACGGATGTGCCATTTGATTTCCGATGCGACCGTGTGTGGGTGTGGGTGAACGCTAATGGGGTGGTCGTTAGCCGTCCTTCCATTGGCTAA 213 53.05 MASTCEGKSSWPELIGTRGDAAAVTIERENPRVDAIIVLEGTDVPFDFRCDRVWVWVNANGVVVSRPSIG 70
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Fra18g01585 70 ProSitePatterns Potato inhibitor I family signature. 11 22 IPR000864 GO:0004867(InterPro)|GO:0009611(InterPro)
Fra18g01585 70 PRINTS Potato inhibitor I signature 47 57 IPR000864 GO:0004867(InterPro)|GO:0009611(InterPro)
Fra18g01585 70 PRINTS Potato inhibitor I signature 10 23 IPR000864 GO:0004867(InterPro)|GO:0009611(InterPro)
Fra18g01585 70 PRINTS Potato inhibitor I signature 35 46 IPR000864 GO:0004867(InterPro)|GO:0009611(InterPro)
Fra18g01585 70 SUPERFAMILY CI-2 family of serine protease inhibitors 4 70 IPR036354 -
Fra18g01585 70 Gene3D Trypsin Inhibitor V, subunit A 1 69 - -
Fra18g01585 70 Pfam Potato inhibitor I family 8 70 IPR000864 GO:0004867(InterPro)|GO:0009611(InterPro)
Fra18g01585 70 PANTHER PROTEIN, PUTATIVE, EXPRESSED-RELATED 4 70 IPR000864 GO:0004867(InterPro)|GO:0009611(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Fra18g01585 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Fra Fra-Chr18:61259527 Fra18g01587 Fra-Chr18:61271665 dispersed
Fra Fra-Chr18:61253963 Fra18g01585 Fra-Chr18:61259527 tandem
Fra Fra-Chr18:61259527 Fra18g01586 Fra-Chr18:61263827 tandem