Gene detail

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Gene ID

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Or, Query Sequence

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Gene details

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Fra18g01645	ATGTCGTTTAAGAGTATGATTCAGGATATGAAGGGGGATTTGGGGAGTATTTCTAGGAAAGGGTTTGGGTTGAGGTCGAGGTCTCAGAGAGTGGTGGAGGATAGATCTCTGGTGGTTGTTGATGCGTTGAAGCAGAGTTGTTGGGCGAACATGCCGCCGGAGCTGCTGCGGGATGTGTTGATGAGGATTGAGGCGTCGGAGTGCGCGTGGCCTCTTCGGAGGAATGTGGTTTGTTGTGCTGGTGTGTGCAGGAATTGGAGGGAGATTATGAAAGATATTGTCAAGAATCCTGAGTTTTCGGGCAAGTTGACTTTCCCCATTTCGCTGAAACAGCCTGGTCCAAGGGGCTCTCTAATACAATGCTATATAAAGCGGAACCGAAGCGCTCAAACATATCATCTCTACCTTAGTTTAAATCAAGCATCAAACGATGATGGGAAGTTTCTTCTTGCTGCAAAAAAATGTAGACGTGCTACATGCACAGATTATATAATCTCTTTAAATTCAGAAGATGTATCAAAAGGCAGCAGCACATACATAGGAAAGTTAAGATCAAACTTCCTTGGAACTAAGTTCACTGTATATGATGCCCAACCTCCAAATGGTGGAGCTTTGACTACAAAATGCCGTTCCTTGAGGCCTGGGAGTATGAAGCGAGTGTCACCCAGGGTTCCTGCTGGAAACTACCCGGTTTCCAACATTTCATATGAACTTAATGTCTTGGGGTCCAGAAACAGGGGGCCAAGAAGGATGCAGTGTATAATGAATGCAATTCCTGCAAGTGCTATGGACCCAGGGGGAGCGGCCCCAACTCAGACCGAATTTCTTGTCAGCAATGTGGATTCATTTTCATCTCTACCTTTTTTCAGATCAAAATCTGCACGTATTGATAATTTCCAATCTGGGTCATCATTGTCTGGTCAAAACGACTCGATGCTGATGTTGAAGAACAAGGCGCCTAGGTGGCATGAACAACTGCAATGCTGGTGCCTGAATTTCAATGGGCGGGTGACTGTTGCTTCTGTGAAAAACTTTCAGTTAGTTGCTTCTACAGAGAATGGAGAAGATGACAATGTGATTATACAATTTGGAAAAGTCGGAAAAGATGCATTCACAATGGATTATCAGTACCCGTTGTCAGCTTTCCAGGCGTTTGCTATTTGTCTTAGCAGCTTTGACACCAAAATTGCTTGTGAATGA	1200	44.58	MSFKSMIQDMKGDLGSISRKGFGLRSRSQRVVEDRSLVVVDALKQSCWANMPPELLRDVLMRIEASECAWPLRRNVVCCAGVCRNWREIMKDIVKNPEFSGKLTFPISLKQPGPRGSLIQCYIKRNRSAQTYHLYLSLNQASNDDGKFLLAAKKCRRATCTDYIISLNSEDVSKGSSTYIGKLRSNFLGTKFTVYDAQPPNGGALTTKCRSLRPGSMKRVSPRVPAGNYPVSNISYELNVLGSRNRGPRRMQCIMNAIPASAMDPGGAAPTQTEFLVSNVDSFSSLPFFRSKSARIDNFQSGSSLSGQNDSMLMLKNKAPRWHEQLQCWCLNFNGRVTVASVKNFQLVASTENGEDDNVIIQFGKVGKDAFTMDYQYPLSAFQAFAICLSSFDTKIACE	399

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Fra18g01645	399	Gene3D	Tubby Protein; Chain A	106	399	IPR025659	-
	Fra18g01645	399	PANTHER	TUBBY-RELATED	44	398	-	-
	Fra18g01645	399	Pfam	F-box domain	48	92	IPR001810	GO:0005515(InterPro)
	Fra18g01645	399	PRINTS	Tubby superfamily signature	315	332	IPR000007	-
	Fra18g01645	399	PRINTS	Tubby superfamily signature	228	255	IPR000007	-
	Fra18g01645	399	PRINTS	Tubby superfamily signature	163	179	IPR000007	-
	Fra18g01645	399	PRINTS	Tubby superfamily signature	179	203	IPR000007	-
	Fra18g01645	399	PRINTS	Tubby superfamily signature	333	349	IPR000007	-
	Fra18g01645	399	PRINTS	Tubby superfamily signature	377	399	IPR000007	-
	Fra18g01645	399	PRINTS	Tubby superfamily signature	356	375	IPR000007	-
	Fra18g01645	399	CDD	F-box-AtTLP-like	48	92	-	-
	Fra18g01645	399	FunFam	Tubby-like F-box protein	105	399	-	-
	Fra18g01645	399	Pfam	Tub family	109	394	IPR000007	-
	Fra18g01645	399	ProSitePatterns	Tub family signature 2.	384	399	IPR018066	-
	Fra18g01645	399	SUPERFAMILY	Tubby C-terminal domain-like	97	399	IPR025659	-

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Fra18g01645	K19600	tubby and related proteins

Duplication type information

Select	Gene1	Location1	Gene2	Location2	Duplicated-type
	Fra	Fra-Chr14:21353018	Fra18g01645	Fra-Chr18:63489940	dispersed
	Fra	Fra-Chr18:63489940	Fra9g01343	Fra-Chr9:17524984	dispersed
	Fra	Fra-Chr18:63489940	Fra3g00675	Fra-Chr3:46478569	transposed

Gene Family Members

Select	Gene	Event_type	S_start	S_end	Function	Ath_gene	Identity(%)	E-value	Score
	Fra1g00202	.	1	445	TUB Transcription Factor family	AT1G25280	67.108	0.0	559.0
	Fra3g00675	.	51	406	TUB Transcription Factor family	AT2G47900	70.112	5.87e-177	496.0
	Fra5g00789	ACH	1	393	TUB Transcription Factor family	AT2G18280	58.67	3.65e-173	487.0
	Fra6g01210	.	1	379	TUB Transcription Factor family	AT1G53320	64.109	0.0	513.0
	Fra7g03267	.	8	397	TUB Transcription Factor family	AT1G16070	52.685	1.88e-146	419.0
	Fra9g01343	ACH	1	393	TUB Transcription Factor family	AT2G18280	63.504	8.39e-180	504.0
	Fra9g01408	.	1	393	TUB Transcription Factor family	AT2G18280	63.504	8.39e-180	504.0
	Fra10g00266	.	1	379	TUB Transcription Factor family	AT1G53320	64.541	6.49e-180	502.0
	Fra11g02118	.	1	445	TUB Transcription Factor family	AT1G25280	75.778	0.0	632.0
	Fra14g00215	.	1	445	TUB Transcription Factor family	AT1G25280	73.246	0.0	616.0
	Fra17g01461	.	42	413	TUB Transcription Factor family	AT1G47270	56.842	2.22e-149	426.0
	Fra18g01645	.	1	406	TUB Transcription Factor family	AT2G47900	76.039	0.0	610.0
	Fra10000166.1g00001	.	30	406	TUB Transcription Factor family	AT2G47900	68.638	0.0	525.0

Transcription factors information

Select	Gene	Hmm_acc	Hmm_name	Score	E-value	Regulatory Factors	Family
	Fra	Tub	1.1e-108	CL0395		TF	TUB