AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Fra1g01600 ATGGCTCTTTTGGAATCAAACAAAAACAGAGGAGAGGTGAGGGTTCATGAAAATTTAGATGATCTGAGCACGAATTTGGCTGATTATATAGCTGAATTATCCGAGGCATCGGTTAAAGAACGTGGCTTTTTTGCCATTGCTTTATCTGGTGGTTCCATCATTAGCTTGATGAGGAATCTATGTGGAGCTCCTTATAACAAGACTGTTGATTGGTCAAAATGGTATATATTTTGGGCAGATGAACGAGTGGTTGCCAAGACTCATGTCGATAGCAACTATAAGCTTGCTAAAGATCATCTTTTGTCTAAGTTGCCTATTGTTCCTAGTCATGTACATTCCATCAATGATTCCCTCACCGCAGAAGAAGCTGCAAATGAATACGAGTATGTAATCAGGCAACTGGTCAGAACCCGTGTGGTCAACGTGTCAGAGGTCAGCGACTGCCCGAAGTTTGACCTGATCCTTCTAGGGATGGGCCCAGATGGCCACGTGGCGTCTTTGTTTCCAAATCATTCGGTTCTTGAAGAAAAGAATGAATGGGTGACATTTATCACCACTTCCCCTAAGCCTCCACCAGAAAGGATCACCTTCACACTGCCAGTTATCAACTCTGCTGCCAATGTGGCAGTGGTGGTGACAGGTGGCGAGAAAGCGGAAGCTTCCCAGCTGGCGATAGATGACGTGGGACCCGAGGGTCCGGTGTTGCCAGCTAGGATGATTGAACCAGCTGTAGGGAAACTGGTGTGGTTTTTGGATAAACAGGCTGCTGCAAAGCTCAAGGGCTTTTCTCAATTTTCTAAGTAG 804 45.65 MALLESNKNRGEVRVHENLDDLSTNLADYIAELSEASVKERGFFAIALSGGSIISLMRNLCGAPYNKTVDWSKWYIFWADERVVAKTHVDSNYKLAKDHLLSKLPIVPSHVHSINDSLTAEEAANEYEYVIRQLVRTRVVNVSEVSDCPKFDLILLGMGPDGHVASLFPNHSVLEEKNEWVTFITTSPKPPPERITFTLPVINSAANVAVVVTGGEKAEASQLAIDDVGPEGPVLPARMIEPAVGKLVWFLDKQAAAKLKGFSQFSK 267
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Fra1g01600 267 Pfam Glucosamine-6-phosphate isomerases-6-phosphogluconolactonase 19 249 IPR006148 GO:0005975(InterPro)
Fra1g01600 267 CDD 6PGL 20 251 IPR005900 GO:0005975(InterPro)|GO:0006098(InterPro)|GO:0017057(InterPro)
Fra1g01600 267 FunFam Probable 6-phosphogluconolactonase 8 260 - -
Fra1g01600 267 PANTHER 6-PHOSPHOGLUCONOLACTONASE 5 260 IPR039104 -
Fra1g01600 267 SUPERFAMILY NagB-RpiA-CoA transferase-like 13 260 IPR037171 -
Fra1g01600 267 NCBIfam 6-phosphogluconolactonase 15 259 IPR005900 GO:0005975(InterPro)|GO:0006098(InterPro)|GO:0017057(InterPro)
Fra1g01600 267 Coils Coil 19 39 - -
Fra1g01600 267 Gene3D - 8 262 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Fra1g01600 K01057 6-phosphogluconolactonase [EC:3.1.1.31]
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Event-related genes

Select Gene_1 Gene_2 Event_name
89961 Fra13g00685 Fra1g01600
393934 Fra14g01144 Fra1g01600
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
2445239 Fra Fra1g01600 Fra-Chr1:76757393 Fra6g00249 Fra-Chr6:8327431
2467597 Fra Fra1g01600 Fra-Chr1:76757393 Fra13g00685 Fra-Chr13:34051976
2467761 Fra Fra1g01600 Fra-Chr1:76757393 Fra14g01144 Fra-Chr14:42242573