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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Fra7g01740 ATGGAGAGAAACGAGGCCTGTGGCTTGACGGCATTTGGTGCTTTCGAAATGGGAATCGGAATGGATAACGCTTTCAATTCCAATGCCAATGCCAATGCCAATGCTAATGTCAATAAAGCTTCTGCTGCCGTTGATAGGGATCTCGTCGCTGCTGCTCGATTTGATTTCTTGAAGAAGAAACGGATGCCCAGATTCCGGCGAGGTGCCTCCGCCGCGCTCCGGTCGTTTCGTCCCTTCACCTCCTTCAATGCTCCTCTACCTGCGAGTATTGTTGATCAGGGAAGGCTGACATTTCTGTTCAGCAAGAAGCTGCAAAAAAGCGATGTAGGTGTGCTAAAAAGAATTGTGCTGCCAAAGAAACCAGCAGAAACACACCTACCTGCTCTGATTGCGAAGGAAGGTATCGTTTTGGAGATGGATGACATGGATGGCATGAATGTGTGGTGTTTCAAGTTTAGGTTCTGGCCAAACAATAACAGTCGCATGTATGTCCTCGAGGGTACTGGGGATTTTGCCGAGGAGCATGAGCTGCAACTTGGTGACTATATAATGTTGTATCGGGATTCAGTGAATCTTAACTATGTGATACAAGCTGTAAAAGCATATGAAGTTGAGGAATACGCAAAGAAAGAAGTGAAATCAAACCTCGGTACTCAGGGGAAATCTGTCAAAGCACCACCAAATACTGGTAGTTTAATGAACCAAAACTGCTCATGGGGCGGTCTTGAGGTTGAGCTATTGAACCCAATCAACTACCCTATGAATACTTCGACTGTCGAGGAGCAGATGGATATGACCTTCATATATGATACCAGCTACTCCAACGACACTATGTCTCCACTTGATTTCTTGGGTGGATTCATGACAAGCTACCCGGCTCAGCCGAACTTTGCGATCGAGAATTTGTCGATTGATGATCTGTACAAGATCTAG 933 45.87 MERNEACGLTAFGAFEMGIGMDNAFNSNANANANANVNKASAAVDRDLVAAARFDFLKKKRMPRFRRGASAALRSFRPFTSFNAPLPASIVDQGRLTFLFSKKLQKSDVGVLKRIVLPKKPAETHLPALIAKEGIVLEMDDMDGMNVWCFKFRFWPNNNSRMYVLEGTGDFAEEHELQLGDYIMLYRDSVNLNYVIQAVKAYEVEEYAKKEVKSNLGTQGKSVKAPPNTGSLMNQNCSWGGLEVELLNPINYPMNTSTVEEQMDMTFIYDTSYSNDTMSPLDFLGGFMTSYPAQPNFAIENLSIDDLYKI 310
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Fra7g01740 310 SUPERFAMILY DNA-binding pseudobarrel domain 98 197 IPR015300 -
Fra7g01740 310 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 75 200 IPR044800 GO:0003700(InterPro)
Fra7g01740 310 Gene3D - 96 215 IPR015300 -
Fra7g01740 310 ProSiteProfiles B3 DNA-binding domain profile. 100 202 IPR003340 GO:0003677(InterPro)
Fra7g01740 310 CDD B3-DNA 98 197 IPR003340 GO:0003677(InterPro)
Fra7g01740 310 Pfam B3 DNA binding domain 100 197 IPR003340 GO:0003677(InterPro)
Fra7g01740 310 SMART B3-2 100 202 IPR003340 GO:0003677(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Fra7g01740 K09287 RAV-like factor
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Fra Fra-Chr3:58449641 Fra7g01740 Fra-Chr7:74733595 dispersed
Fra Fra-Chr7:74733595 Fra1g00503 Fra-Chr1:59010709 transposed
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Fra1g00430 . 3 733 B3 DNA Binding Superfamily AT4G32010 45.363 0.0 641.0
Fra1g00489 . 4 221 B3 DNA Binding Superfamily AT5G58280 50.442 1.90e-69 215.0
Fra1g00503 WGDA 3 583 B3 DNA Binding Superfamily AT4G32010 46.508 0.0 531.0
Fra1g00520 . 4 221 B3 DNA Binding Superfamily AT5G58280 50.442 1.48e-69 215.0
Fra1g01013 . 1 855 B3 DNA Binding Superfamily AT5G62000 58.247 0.0 942.0
Fra1g01244 . 103 394 B3 DNA Binding Superfamily AT5G62000 45.118 6.55e-77 251.0
Fra2g00827 . 7 583 B3 DNA Binding Superfamily AT2G46530 59.344 0.0 675.0
Fra2g01132 WGDA 519 628 B3 DNA Binding Superfamily AT4G32010 31.858 8.31e-06 48.5
Fra2g01335 . 7 616 B3 DNA Binding Superfamily AT4G23980 57.975 0.0 686.0
Fra3g00106 . 1 844 B3 DNA Binding Superfamily AT5G62000 58.049 0.0 928.0
Fra3g00140 WGDA 269 398 B3 DNA Binding Superfamily AT2G30470 48.855 2.75e-37 137.0
Fra3g00860 . 12 659 B3 DNA Binding Superfamily AT4G30080 53.411 0.0 655.0
Fra3g01315 . 5 751 B3 DNA Binding Superfamily AT4G32010 50.946 0.0 713.0
Fra3g01584 . 164 289 B3 DNA Binding Superfamily AT1G05930 25.581 4.72e-07 48.5
Fra3g01586 . 178 289 B3 DNA Binding Superfamily AT1G05930 29.565 8.96e-09 53.1
Fra3g01589 . 164 289 B3 DNA Binding Superfamily AT1G05930 25.581 7.27e-07 47.8
Fra3g01591 . 164 289 B3 DNA Binding Superfamily AT1G05930 25.581 4.20e-07 48.5
Fra3g01593 . 164 289 B3 DNA Binding Superfamily AT1G05930 25.581 7.01e-07 47.8
Fra3g01594 . 164 289 B3 DNA Binding Superfamily AT1G05930 25.581 4.25e-07 48.1
Fra4g00377 . 44 131 B3 DNA Binding Superfamily AT4G01580 24.731 2.07e-07 47.4
Fra4g00378 . 10 322 B3 DNA Binding Superfamily AT5G66980 22.324 1.53e-14 71.2
Fra4g00539 . 54 485 B3 DNA Binding Superfamily AT2G33860 56.081 8.71e-155 454.0
Fra4g00994 . 167 289 B3 DNA Binding Superfamily AT1G05930 31.343 1.31e-08 53.1
Fra4g00995 . 167 289 B3 DNA Binding Superfamily AT1G05930 29.771 1.70e-08 52.8
Fra4g01001 . 167 298 B3 DNA Binding Superfamily AT1G05930 25.373 1.18e-06 47.0
Fra4g01002 . 167 289 B3 DNA Binding Superfamily AT1G05930 29.323 5.02e-08 51.2
Fra4g01189 . 10 322 B3 DNA Binding Superfamily AT5G66980 22.324 1.53e-14 71.2
Fra4g01291 . 145 219 B3 DNA Binding Superfamily AT3G19184 35.0 9.39e-09 50.4
Fra5g00501 . 62 772 B3 DNA Binding Superfamily AT5G60450 54.04 0.0 729.0
Fra5g01393 . 33 895 B3 DNA Binding Superfamily AT1G19850 57.596 0.0 936.0
Fra6g01054 ACH 8 221 B3 DNA Binding Superfamily AT3G19184 62.673 8.66e-86 254.0
Fra6g01468 . 1 488 B3 DNA Binding Superfamily AT1G19220 66.403 0.0 648.0
Fra7g00458 . 32 462 B3 DNA Binding Superfamily AT1G19850 74.424 0.0 667.0
Fra7g01155 . 1 797 B3 DNA Binding Superfamily AT5G37020 56.647 0.0 846.0
Fra7g01207 . 1 559 B3 DNA Binding Superfamily AT2G33860 49.406 3.92e-174 506.0
Fra7g01740 . 45 313 B3 DNA Binding Superfamily AT3G26790 42.215 1.35e-58 189.0
Fra7g02395 ACH 95 200 B3 DNA Binding Superfamily AT5G42700 54.717 2.96e-32 119.0
Fra7g02398 . 115 236 B3 DNA Binding Superfamily AT3G19184 50.82 6.93e-39 140.0
Fra8g02408 . 20 486 B3 DNA Binding Superfamily AT1G19220 75.264 0.0 714.0
Fra9g00810 . 9 610 B3 DNA Binding Superfamily AT4G23980 58.514 0.0 676.0
Fra9g01201 ACH 115 273 B3 DNA Binding Superfamily AT3G19184 40.881 9.83e-30 115.0
Fra9g01591 . 1 794 B3 DNA Binding Superfamily AT5G37020 65.056 0.0 971.0
Fra10g00059 . 108 230 B3 DNA Binding Superfamily AT3G19184 56.098 9.77e-44 152.0
Fra10g00427 . 3 663 B3 DNA Binding Superfamily AT1G59750 67.523 0.0 865.0
Fra10g01692 . 1 616 B3 DNA Binding Superfamily AT4G23980 57.943 0.0 685.0
Fra11g00071 . 15 660 B3 DNA Binding Superfamily AT4G21550 34.699 4.78e-112 354.0
Fra11g00470 . 1 797 B3 DNA Binding Superfamily AT5G37020 57.243 0.0 843.0
Fra11g00551 . 51 508 B3 DNA Binding Superfamily AT2G33860 55.769 2.67e-169 493.0
Fra11g02729 . 71 199 B3 DNA Binding Superfamily AT5G42700 40.31 2.18e-27 105.0
Fra11g02730 ACH 112 220 B3 DNA Binding Superfamily AT3G19184 58.716 1.16e-38 139.0
Fra12g00522 . 1 666 B3 DNA Binding Superfamily AT4G30080 57.31 0.0 705.0
Fra12g00728 . 62 772 B3 DNA Binding Superfamily AT5G60450 53.887 0.0 727.0
Fra12g00743 . 2 693 B3 DNA Binding Superfamily AT2G28350 52.394 0.0 666.0
Fra12g01547 . 1 796 B3 DNA Binding Superfamily AT5G37020 67.515 0.0 1004.0
Fra12g02246 . 33 895 B3 DNA Binding Superfamily AT1G19850 58.98 0.0 965.0
Fra14g00641 . 16 488 B3 DNA Binding Superfamily AT1G19220 67.418 0.0 635.0
Fra14g01554 . 1 572 B3 DNA Binding Superfamily AT4G30080 53.109 0.0 562.0
Fra15g00283 . 16 124 B3 DNA Binding Superfamily AT3G18960 31.193 4.08e-11 60.8
Fra15g01467 . 2 539 B3 DNA Binding Superfamily AT4G30080 53.501 0.0 540.0
Fra16g00743 . 1 850 B3 DNA Binding Superfamily AT5G62000 57.706 0.0 933.0
Fra16g00813 WGDA 246 389 B3 DNA Binding Superfamily AT4G32010 48.276 1.06e-37 139.0
Fra16g01124 . 2 693 B3 DNA Binding Superfamily AT2G28350 55.222 0.0 656.0
Fra16g01167 . 62 772 B3 DNA Binding Superfamily AT5G60450 53.215 0.0 703.0
Fra16g01447 . 1 669 B3 DNA Binding Superfamily AT4G30080 54.899 0.0 684.0
Fra17g00586 WGDA 1 733 B3 DNA Binding Superfamily AT4G32010 46.433 0.0 650.0
Fra17g00946 . 5 751 B3 DNA Binding Superfamily AT4G32010 50.82 0.0 711.0
Fra17g01142 . 1 855 B3 DNA Binding Superfamily AT5G62000 57.339 0.0 938.0
Fra17g01364 . 1 233 B3 DNA Binding Superfamily AT3G19184 53.112 5.24e-72 219.0
Fra10000221.1g00010 . 622 691 B3 DNA Binding Superfamily AT3G24650 84.507 8.37e-36 127.0
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Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Fra B3 5.9e-13 CL0405 TF B3