AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Fro11g01640 ATGGAGAGAAACGAGGCCTGTGGCTTGACGGCATTTGGTGGATTCGAAATGGGAATCGGAATGGATAGCGCTTTCAATTCCAATGCCAATGCCAATGCCAATGCCAATAAATCTTCTGCTGCCGTTGATAGGGATCTCGTCGCCGCCGCTCGATTTGATTTCTTGAAGAAGAAACGGATGCCCAGATTCCGGCGAGGTGCCTCCGCCGCGATCCGCTCGTTTCGTCCATTCACCTCCTTCAATGCCCCTCTACCTGCGAGTATTGTTGATCAGGGAAGATTGACATTTCTCTTCAGCAAGAAGCTGCAGAAAAGTGATGTAGGTGTGCTAAAGAGAATTGTACTGCCAAAGAAACCAGCAGAAACACATCTACCTGCTCTGATTGCGAAGGAAGGTATCGTTTTGGAGATGGATGACATGGATGGCATGAATGTGTGGTGTTTCAAGTTTAGGTTCTGGCCAAATAATAACAGTCGCATGTATGTTCTCGAGGGCACTGGGGATTTTGCCGAGGAGCATGAGCTGCAACTTGGTGACTATATAATGTTGTATCGTGATACAGTGAATCTCAACTATGTGATACAAGCTGTAAAAGCATATGAAGTTGAGGAATACGCAAAGAAAGAAGTGAAATCAAACCTTGGTACTCAGGGGAAATCTGTCAAAGCACCACCAAATACTGGTAGTTTCGTGAACCAAAACTGCTCATGGGGCGGTCTTGAGGTTGAGCTATTGAACCCAATTAACTACCCAATGAACGCTTCGACTGTCGAGGAGCAGATGGATATGACCTTCATATATGATACCAGCTACTCCAACGACACTATGTCTCCACTTGATTTCTTGGGTGGATTCATGACAAGCTACCCGGCTCAGCCAAACTTTGCGATTGAGAATTTGTCGATTGATGATCTGTACAAGATCTAG 927 45.74 MERNEACGLTAFGGFEMGIGMDSAFNSNANANANANKSSAAVDRDLVAAARFDFLKKKRMPRFRRGASAAIRSFRPFTSFNAPLPASIVDQGRLTFLFSKKLQKSDVGVLKRIVLPKKPAETHLPALIAKEGIVLEMDDMDGMNVWCFKFRFWPNNNSRMYVLEGTGDFAEEHELQLGDYIMLYRDTVNLNYVIQAVKAYEVEEYAKKEVKSNLGTQGKSVKAPPNTGSFVNQNCSWGGLEVELLNPINYPMNASTVEEQMDMTFIYDTSYSNDTMSPLDFLGGFMTSYPAQPNFAIENLSIDDLYKI 308
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Fro11g01640 308 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 66 198 IPR044800 GO:0003700(InterPro)
Fro11g01640 308 Gene3D - 94 213 IPR015300 -
Fro11g01640 308 SUPERFAMILY DNA-binding pseudobarrel domain 96 194 IPR015300 -
Fro11g01640 308 ProSiteProfiles B3 DNA-binding domain profile. 98 200 IPR003340 GO:0003677(InterPro)
Fro11g01640 308 CDD B3-DNA 96 195 IPR003340 GO:0003677(InterPro)
Fro11g01640 308 Pfam B3 DNA binding domain 98 194 IPR003340 GO:0003677(InterPro)
Fro11g01640 308 SMART B3-2 98 200 IPR003340 GO:0003677(InterPro)
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Fro11g01640 K09287 RAV-like factor
leaf

Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Fro Fro-Chr11:14862848 Fro18g00238 Fro-Chr18:3416829 dispersed
Fro Fro-Chr11:14862848 Fro18g00317 Fro-Chr18:4435590 transposed
leaf

Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Fro1g00457 . 1 539 B3 DNA Binding Superfamily AT4G30080 53.321 0.0 540.0
Fro1g01132 . 16 124 B3 DNA Binding Superfamily AT3G18960 32.11 4.51e-12 63.9
Fro2g00143 . 1 616 B3 DNA Binding Superfamily AT4G23980 57.015 0.0 681.0
Fro2g01300 . 3 663 B3 DNA Binding Superfamily AT1G59750 67.976 0.0 868.0
Fro2g01569 . 108 230 B3 DNA Binding Superfamily AT3G19184 57.724 2.08e-44 154.0
Fro3g00542 . 1 572 B3 DNA Binding Superfamily AT4G30080 53.65 0.0 561.0
Fro3g00648 . 167 289 B3 DNA Binding Superfamily AT1G05930 27.068 1.34e-06 47.0
Fro3g00649 . 167 289 B3 DNA Binding Superfamily AT1G05930 25.385 2.71e-06 45.8
Fro4g00308 . 1 488 B3 DNA Binding Superfamily AT1G19220 66.535 0.0 642.0
Fro4g00721 ACH 43 199 B3 DNA Binding Superfamily AT5G42700 39.759 4.71e-32 114.0
Fro4g00722 . 8 221 B3 DNA Binding Superfamily AT3G19184 62.212 1.41e-85 253.0
Fro5g00230 . 33 895 B3 DNA Binding Superfamily AT1G19850 58.589 0.0 936.0
Fro5g00307 . 215 232 B3 DNA Binding Superfamily AT1G20600 100.0 3.84e-06 40.8
Fro5g00826 . 62 772 B3 DNA Binding Superfamily AT5G60450 54.377 0.0 727.0
Fro5g01554 . 2 693 B3 DNA Binding Superfamily AT2G28350 54.363 0.0 648.0
Fro6g00373 . 12 659 B3 DNA Binding Superfamily AT4G30080 53.666 0.0 647.0
Fro6g01016 . 1 838 B3 DNA Binding Superfamily AT5G62000 58.698 0.0 943.0
Fro7g00400 . 15 222 B3 DNA Binding Superfamily AT2G46530 76.667 1.16e-111 330.0
Fro8g00795 . 9 610 B3 DNA Binding Superfamily AT4G23980 57.23 0.0 668.0
Fro8g01220 ACH 112 222 B3 DNA Binding Superfamily AT3G19184 47.748 1.86e-28 112.0
Fro8g01524 . 1 794 B3 DNA Binding Superfamily AT5G37020 64.488 0.0 959.0
Fro9g00015 . 1 486 B3 DNA Binding Superfamily AT1G19220 73.834 0.0 723.0
Fro9g01541 . 519 566 B3 DNA Binding Superfamily AT4G32010 43.137 6.57e-06 48.5
Fro10g00541 . 51 485 B3 DNA Binding Superfamily AT2G33860 55.73 9.59e-157 459.0
Fro10g01017 . 167 289 B3 DNA Binding Superfamily AT1G05930 26.316 5.08e-06 45.1
Fro10g01026 . 167 289 B3 DNA Binding Superfamily AT1G05930 29.323 2.06e-08 52.4
Fro10g01193 . 10 317 B3 DNA Binding Superfamily AT5G66980 22.93 5.16e-14 69.7
Fro11g00987 ACH 115 236 B3 DNA Binding Superfamily AT3G19184 50.82 3.14e-39 141.0
Fro11g01640 . 45 313 B3 DNA Binding Superfamily AT3G26790 43.911 5.55e-59 189.0
Fro11g02159 . 1 485 B3 DNA Binding Superfamily AT2G33860 55.081 7.45e-176 511.0
Fro11g02207 . 1 470 B3 DNA Binding Superfamily AT1G19220 58.455 5.13e-170 520.0
Fro11g03449 . 32 475 B3 DNA Binding Superfamily AT1G19850 72.036 0.0 657.0
Fro12g00071 . 9 680 B3 DNA Binding Superfamily AT2G30470 32.999 1.49e-101 328.0
Fro12g00475 . 1 797 B3 DNA Binding Superfamily AT5G37020 56.061 0.0 827.0
Fro12g00556 . 51 485 B3 DNA Binding Superfamily AT2G33860 57.753 1.83e-166 485.0
Fro12g02584 . 112 221 B3 DNA Binding Superfamily AT3G19184 54.545 4.67e-35 129.0
Fro12g02585 ACH 71 199 B3 DNA Binding Superfamily AT5G42700 40.31 2.82e-27 105.0
Fro14g01580 ACH 9 697 B3 DNA Binding Superfamily AT2G30470 47.961 0.0 607.0
Fro15g00202 . 33 895 B3 DNA Binding Superfamily AT1G19850 59.932 0.0 965.0
Fro15g01261 . 1 794 B3 DNA Binding Superfamily AT5G37020 67.558 0.0 1003.0
Fro15g01798 . 2 693 B3 DNA Binding Superfamily AT2G28350 52.99 0.0 665.0
Fro15g01814 . 62 772 B3 DNA Binding Superfamily AT5G60450 53.877 0.0 728.0
Fro15g02051 . 1 666 B3 DNA Binding Superfamily AT4G30080 57.101 0.0 694.0
Fro16g00298 . 246 417 B3 DNA Binding Superfamily AT4G32010 36.994 6.28e-30 117.0
Fro16g00358 . 1 850 B3 DNA Binding Superfamily AT5G62000 57.889 0.0 935.0
Fro16g00426 . 1 850 B3 DNA Binding Superfamily AT5G62000 57.889 0.0 935.0
Fro16g01637 . 7 583 B3 DNA Binding Superfamily AT2G46530 59.442 0.0 689.0
Fro16g02254 . 1 669 B3 DNA Binding Superfamily AT4G30080 54.69 0.0 680.0
Fro17g00095 . 5 751 B3 DNA Binding Superfamily AT4G32010 50.063 0.0 700.0
Fro17g00449 ACH,WGDA 1 733 B3 DNA Binding Superfamily AT4G32010 46.259 0.0 646.0
Fro17g01298 . 1 228 B3 DNA Binding Superfamily AT3G19184 53.556 1.67e-72 220.0
Fro17g01549 . 249 346 B3 DNA Binding Superfamily AT5G62000 72.449 5.51e-45 152.0
Fro17g01696 . 266 855 B3 DNA Binding Superfamily AT5G62000 51.419 0.0 538.0
Fro18g00238 . 431 713 B3 DNA Binding Superfamily AT3G24650 57.931 1.59e-90 297.0
Fro18g00306 . 4 222 B3 DNA Binding Superfamily AT5G58280 51.542 1.57e-71 220.0
Fro18g00317 ACH,WGDA 3 672 B3 DNA Binding Superfamily AT4G32010 48.679 0.0 644.0
Fro18g00903 . 1 855 B3 DNA Binding Superfamily AT5G62000 58.15 0.0 936.0
Fro18g01142 . 71 394 B3 DNA Binding Superfamily AT5G62000 44.377 1.11e-87 281.0
Fro10000096.1g00004 . 15 488 B3 DNA Binding Superfamily AT1G19220 68.163 0.0 639.0
Fro10000179.1g00007 . 1 616 B3 DNA Binding Superfamily AT4G23980 57.855 0.0 684.0
Fro10000252.1g00005 . 112 221 B3 DNA Binding Superfamily AT3G19184 55.455 1.08e-36 133.0
Fro10000252.1g00006 . 71 199 B3 DNA Binding Superfamily AT5G42700 40.31 3.33e-27 104.0
Fro10000468.1g00001 . 7 583 B3 DNA Binding Superfamily AT2G46530 58.949 0.0 688.0
leaf

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Fro B3 8e-13 CL0405 TF B3