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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Fro11g01643 ATGTCATCTCTCTGTGATTTCTGCAACCAGAGATCCGCAGTATTGTACTGTAAAGCCGATTCAGCTAAGCTCTGTTTGCTCTGCGACAACGCCGTACACTCTGCCAACGCTCTCTCTCTCAAGCATCTCCGCTCTCAGATCTGTGATAACTGCGGTTCCGATGGCGTCTCCGTCGTCTGTTCCACCGAGAACCTCCTCCTATGCTCCGGTTGCGACCACGATTTCCACGGTGACTCGTCGGTTTCCTCCTTCCACAACCGCTTCCCCGTCGACGAGATCACCGGTTGCCCTTCTGTGTATGAACTCGCTTCAGTTTGGGGGTTTAGTCTGACACCTTCGGTTTCTGATGGTAATTCGTGTGAGAATAAGTTTTCTGCTACGGATTTTCGGGGTTTAACGACGGGGCGTGATGAAACTAGTTGTTATGATGAGGTGCCTAGTGTTGAGTGGAAATCGAGAGGTTTGGGGTGTGGAGTGCGTTCGAAGGTTTTGTATAAGCAGTTGTTGGAGCTTGCGAAGGAACGATTTGATGGAGATGGAGGTGAATTGGGGCCTCAAACTCCGAGTGGATGTGGTCAGAAGGAGATATCTGAAGGTTTTGAGTTTGAGGAACAAGAGGAGCAGGATTTGTTGAATCAGCAAACTCCTTTGACGTATTTGCTGTTGCCGCCCCAGAATTCGTCGAATTCAAAAGCGAATAATATCACTGAATTTAGTAACATGTGGAGCTATAGCCCTAAACGCCAAACAAGTCAGATATGGGATTTCAGTCTAGGAAGATCAAGGTCTTCTGAGGCAAGATGTGATAATCTTGGTTTTGCGATAAACAACTGTACTGACCTTGTTGAGGATGCTTCTTTCACAACAATGGAAGTGTTAAAAGAAATGGACGCTATAAACATACCTATTGCCACCAATCCTTCACAAAATATATCTGGTTGCAGATCAACAATGGAGAGTGAGAACAGACAAATTACTGGACCATCATCAGAAGCAAAAATGATGGAATTTAATGGATGTGATTCGATCATGGATGGTCAAATGATAGACAGGCTTTTATTGACTAGTCAAGGAATAGAAATACCAGAAACAACCAAAGTGGATGCTCAGCAGTTTGCACAGAACAGATGCAATGCAATGTTACGTTACAAGGAGAAGAAGAAAACACGAAGGTACGAGAAGTGCATCCGCTACGAGTCACGAAAGGCAAGAGCTGATACCAGAAAACGAGTAAAGGGCCGGTTTGTGAAGACGATACAATGA 1263 45.21 MSSLCDFCNQRSAVLYCKADSAKLCLLCDNAVHSANALSLKHLRSQICDNCGSDGVSVVCSTENLLLCSGCDHDFHGDSSVSSFHNRFPVDEITGCPSVYELASVWGFSLTPSVSDGNSCENKFSATDFRGLTTGRDETSCYDEVPSVEWKSRGLGCGVRSKVLYKQLLELAKERFDGDGGELGPQTPSGCGQKEISEGFEFEEQEEQDLLNQQTPLTYLLLPPQNSSNSKANNITEFSNMWSYSPKRQTSQIWDFSLGRSRSSEARCDNLGFAINNCTDLVEDASFTTMEVLKEMDAINIPIATNPSQNISGCRSTMESENRQITGPSSEAKMMEFNGCDSIMDGQMIDRLLLTSQGIEIPETTKVDAQQFAQNRCNAMLRYKEKKKTRRYEKCIRYESRKARADTRKRVKGRFVKTIQ 420
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Fro11g01643 420 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 3 417 - -
Fro11g01643 420 Pfam CCT motif 376 417 IPR010402 GO:0005515(InterPro)
Fro11g01643 420 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270(InterPro)
Fro11g01643 420 ProSiteProfiles Zinc finger B-box type profile. 43 90 IPR000315 GO:0008270(InterPro)
Fro11g01643 420 ProSiteProfiles CCT domain profile. 376 418 IPR010402 GO:0005515(InterPro)
Fro11g01643 420 CDD Bbox1-BBX-like 4 47 IPR049808 -
Fro11g01643 420 SMART bboxneu5 1 47 IPR000315 GO:0008270(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Fro11g01643 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Fro Fro-Chr11:14883995 Fro17g00205 Fro-Chr17:1990374 dispersed
Fro Fro-Chr11:14883995 Fro3g00128 Fro-Chr3:1460384 wgd
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Fro2g00985 . 253 355 C2C2-CO-like Transcription Factor family AT5G57660 59.048 1.82e-25 99.4
Fro2g01459 . 1 373 C2C2-CO-like Transcription Factor family AT5G48250 51.442 4.02e-133 385.0
Fro2g01525 . 1 196 C2C2-CO-like Transcription Factor family AT1G75540 52.5 1.25e-62 195.0
Fro3g00759 . 270 331 C2C2-CO-like Transcription Factor family AT5G57660 43.243 8.43e-11 60.1
Fro3g01165 ACH 1 373 C2C2-CO-like Transcription Factor family AT5G48250 56.579 7.66e-136 390.0
Fro3g01483 . 8 355 C2C2-CO-like Transcription Factor family AT5G57660 45.714 1.61e-97 293.0
Fro4g00597 . 1 196 C2C2-CO-like Transcription Factor family AT1G75540 48.98 5.61e-56 179.0
Fro4g00649 . 1 372 C2C2-CO-like Transcription Factor family AT3G07650 52.727 1.16e-129 374.0
Fro5g00123 . 269 329 C2C2-CO-like Transcription Factor family AT5G57660 44.262 3.90e-11 62.0
Fro5g01351 . 284 331 C2C2-CO-like Transcription Factor family AT5G57660 52.083 5.21e-10 57.4
Fro6g00854 . 1 331 C2C2-CO-like Transcription Factor family AT1G75540 39.244 7.72e-71 219.0
Fro6g00861 . 272 319 C2C2-CO-like Transcription Factor family AT3G02380 58.333 5.89e-14 65.5
Fro7g00367 ACH,WGDA 225 270 C2C2-CO-like Transcription Factor family AT2G24790 60.87 1.47e-12 65.1
Fro7g00777 ACH 1 373 C2C2-CO-like Transcription Factor family AT5G48250 55.164 3.20e-138 397.0
Fro8g00272 WGDA 3 199 C2C2-CO-like Transcription Factor family AT5G54470 42.18 3.81e-31 112.0
Fro8g01027 . 289 400 C2C2-CO-like Transcription Factor family AT1G68520 41.379 1.39e-20 90.1
Fro9g01275 . 1 299 C2C2-CO-like Transcription Factor family AT1G78600 53.651 2.80e-97 287.0
Fro9g01349 . 3 165 C2C2-CO-like Transcription Factor family AT4G27310 40.964 3.37e-33 117.0
Fro9g01566 . 45 406 C2C2-CO-like Transcription Factor family AT5G24930 49.612 1.89e-97 294.0
Fro9g01831 ACH,WGDA 225 276 C2C2-CO-like Transcription Factor family AT2G24790 57.692 9.13e-13 65.9
Fro10g00159 . 3 90 C2C2-CO-like Transcription Factor family AT4G27310 51.648 1.81e-25 97.1
Fro10g00208 . 1 183 C2C2-CO-like Transcription Factor family AT4G38960 56.744 4.06e-77 228.0
Fro11g01051 ACH 11 347 C2C2-CO-like Transcription Factor family AT3G02380 47.826 4.80e-113 333.0
Fro11g01643 . 12 398 C2C2-CO-like Transcription Factor family AT2G33500 37.963 8.56e-75 237.0
Fro11g02311 WGDA 1 129 C2C2-CO-like Transcription Factor family AT5G54470 43.704 1.20e-27 103.0
Fro12g02147 . 250 319 C2C2-CO-like Transcription Factor family AT3G02380 40.0 5.14e-09 53.9
Fro12g02424 ACH 1 372 C2C2-CO-like Transcription Factor family AT3G07650 52.844 1.89e-133 385.0
Fro12g02556 . 1 204 C2C2-CO-like Transcription Factor family AT1G75540 52.381 7.21e-64 198.0
Fro14g00516 . 306 388 C2C2-CO-like Transcription Factor family AT5G24930 39.759 6.53e-12 64.7
Fro15g00766 . 270 386 C2C2-CO-like Transcription Factor family AT5G24930 36.066 1.53e-12 66.6
Fro15g01562 ACH 9 347 C2C2-CO-like Transcription Factor family AT3G02380 51.571 1.20e-118 346.0
Fro16g00568 WGDA 229 319 C2C2-CO-like Transcription Factor family AT3G02380 40.86 9.55e-13 64.7
Fro16g00670 . 229 319 C2C2-CO-like Transcription Factor family AT3G02380 40.86 8.44e-13 64.7
Fro16g01742 ACH 284 329 C2C2-CO-like Transcription Factor family AT5G57660 54.348 8.97e-11 60.5
Fro16g01823 ACH 284 329 C2C2-CO-like Transcription Factor family AT5G57660 54.348 8.19e-11 60.5
Fro17g00205 WGDA 8 328 C2C2-CO-like Transcription Factor family AT2G47890 43.052 6.10e-91 275.0
Fro17g00536 . 185 270 C2C2-CO-like Transcription Factor family AT2G24790 40.698 2.86e-12 63.5
Fro18g00124 WGDA 7 328 C2C2-CO-like Transcription Factor family AT2G47890 44.974 1.51e-95 286.0
Fro18g01629 . 10 297 C2C2-CO-like Transcription Factor family AT1G68190 38.365 8.56e-59 193.0
Fro10000091.1g00003 . 8 355 C2C2-CO-like Transcription Factor family AT5G57660 45.714 8.22e-98 293.0
Fro10000073.1g00018 . 1 373 C2C2-CO-like Transcription Factor family AT5G48250 56.842 3.57e-137 393.0
Fro10000242.1g00011 . 1 372 C2C2-CO-like Transcription Factor family AT3G07650 52.844 1.89e-133 385.0
Fro10000314.1g00003 . 1 331 C2C2-CO-like Transcription Factor family AT1G75540 44.444 5.12e-79 241.0
Fro10000161.1g00004 . 225 276 C2C2-CO-like Transcription Factor family AT2G24790 55.769 9.41e-13 65.5
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Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Fro CCT 5.8e-15 CL0281 TF C2C2-CO-like