AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Fro11g01647 ATGGCAGTCAAGGCCGCGATTCACTTCTCCGACGTACCGCATTTGGATCACGTCAACGACGCCGCCGCGTCGCTGTCGCTCTACGCCACCCGCCTCCCCACCGGATTGGATGTGAGTAATGCCCCCAAAGTTTTGCCGAAATTCATGGTGGTCGGTCACCGGGGCCATGGGATGAACATCTTACAGTCGAATGATAAGAGGTTGAAGGTGTATAAGGAGAATTCCATTCTTTCGTTCAACAACGCCGCTAATCATCCTCTCGATTTCATTGAATTTGATGTTCAGGTGACAAAAGACGACACACCAGTCATCTTTCACGACAATTTCATCCTCTCTGAAGAGAATGGTAACATAGTTGAAAAACGAGTCACCGATTTGACTTTGGATGAGTTCTTCAGTTATGGTCCTCAACGCGAAACAGGTCGGGTGGGTAAAACATTGCTGAGAAGATCAAACGGGAAGATTGTCGGGTGGGACGTCGAGATCGATGATCATTCTTGCACTCTTGAAGAAGCATTCAAGAAAGTGAATCCTTGCTTGGGATTCAACATTGAGTTGAAATTTGATGATTACATTGTTTATGAAGAAGAGTATCTCATTCATGTTCTTCAAGTTATCTTAAAGGTGGTATACGAAAACGCCCAAGAAAGACCTGTACTTTTCTCAAGCTTCCAGCCTGATGTGGCCTTGCTTATGAAGAAGCTTCAACATAAATACCCGGTGTACTTCTTGACAAATGGCGGAAATGAGATATTCGATGACGTGAGAATGAACTCGTTAGAAGAAGCGAAGAAGCTGGCCATATCGGGCGGTTTGGATGGAGTTGTTTCGGAAGTAAAGGGTATATTTAGGAACCCTTCAGTAGTAACAGAGATCAAAGAATCAAATCTCTCCCTCCTTACTTATGGCAAACTAAATAACGTCCCTGAAGCCGTACACGTCCAATATCTTATGGGCGTCGAGGGTGTCATTGTTGATCTAGTGCAAGAAATTACAAGTGCAGTTGCAGGTTTAAAAACAGGATTTGAAGGAGAGGAAGGAGGATCACAAGTGAAAGAGAACAACGATAAGATCGAACTGCCGTTCTTGCTGAGTTTGATTTCACAAGTGATTCAACATTGA 1122 44.12 MAVKAAIHFSDVPHLDHVNDAAASLSLYATRLPTGLDVSNAPKVLPKFMVVGHRGHGMNILQSNDKRLKVYKENSILSFNNAANHPLDFIEFDVQVTKDDTPVIFHDNFILSEENGNIVEKRVTDLTLDEFFSYGPQRETGRVGKTLLRRSNGKIVGWDVEIDDHSCTLEEAFKKVNPCLGFNIELKFDDYIVYEEEYLIHVLQVILKVVYENAQERPVLFSSFQPDVALLMKKLQHKYPVYFLTNGGNEIFDDVRMNSLEEAKKLAISGGLDGVVSEVKGIFRNPSVVTEIKESNLSLLTYGKLNNVPEAVHVQYLMGVEGVIVDLVQEITSAVAGLKTGFEGEEGGSQVKENNDKIELPFLLSLISQVIQH 373
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Fro11g01647 373 PANTHER GLYCEROPHOSPHORYL DIESTER PHOSPHODIESTERASE 42 338 IPR051578 GO:0046475(PANTHER)
Fro11g01647 373 Pfam Glycerophosphoryl diester phosphodiesterase family 53 328 IPR030395 GO:0006629(InterPro)|GO:0008081(InterPro)
Fro11g01647 373 SUPERFAMILY PLC-like phosphodiesterases 46 329 IPR017946 GO:0006629(InterPro)|GO:0008081(InterPro)
Fro11g01647 373 Gene3D Phosphatidylinositol (PI) phosphodiesterase 44 336 IPR017946 GO:0006629(InterPro)|GO:0008081(InterPro)
Fro11g01647 373 ProSiteProfiles GP-PDE domain profile. 48 335 IPR030395 GO:0006629(InterPro)|GO:0008081(InterPro)
Fro11g01647 373 FunFam Glycerophosphodiester phosphodiesterase GDPD2 39 337 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Fro11g01647 K18696 glycerophosphodiester phosphodiesterase [EC:3.1.4.46]
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Event-related genes

Select Gene_1 Gene_2 Event_name
92112 Fro11g01647 Fro15g01719
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Fro Fro-Chr2:5034787 Fro11g01647 Fro-Chr11:14923485 transposed
Fro Fro-Chr11:14923485 Fro15g01719 Fro-Chr15:31747555 wgd