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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Fro11g01656 ATGCCTTCAATCCCCGAAGACCCAATTCTCGCTCCAAACCCAGATCGATTCTGCATGTTTCCAATCCAATACCCCCAAATTTGGGAAATGTACAAGAAAGCCGAAGCCTCCTTCTGGACCGCAGAAGAAGTCGATTTATCACAAGATCAACGCCACTGGGAGTCGTTGACCGACGGCGAACGCCACTTCATTACCCACGTTCTCGCCTTCTTCGCCGCCTCCGACGGCATCGTGCTCGAAAACCTCGCCGGAAGGTTCATGAAAGAGGTCCAGATCGCTGAAGCTCGTGCGTTCTACGGCTTCCAGATCGCGATTGAGAACATTCACTCCGAGATGTACAGTCTGCTCCTCGAATCGTATATCAAAGACTCCGATCAGAAGAATCGGTTGTTTCGAGCGATTGAGACGATCCCGTGTGTCGAGAAGAAGGCGAATTGGGCACTCCGGTGGATCGACGGATCGGAGTCATTCGCCGAACGTATAATAGCGTTTGCGTGTGTCGAAGGGATCTTCTTCTCCGGCAGCTTCTGCGCTATCTTCTGGCTGAAGAAACGTGGGTTGATGCCGGGGTTAACGTTTTCAAACGAATTGATTTCACGAGACGAAGGGTTACACTGCGATTTCGCTTGTTTGTTGTACGGGTTGTTGAAGACGAAGGTGAGTGAAGAACGAGTCAAAGGAATCGTTGCTGATGCGGTGGAGATTGAACGAGAGTTTGTTTGTGATGCGTTACCGTGTGCTCTTGTGGGCATGAACGGTGATCTCATGAGTCAATACATCGAATTTGTTGCTGATCGATTATTGGGTGCATTGGGATGTAGCAAAGTGTATAATGTGCAGAATCCGTTTGATTGGATGGAGCTGATTTCGTTGCAGGGGAAGACGAATTTCTTTGAGAAGAGAGTTGGTGAGTATCAGAAAGCTTCTGTGATGTCGAATTTGAATGGTAATGGCGATTCTCATGTCTTCAAGATGGATGAAGATTTCTGA 990 48.38 MPSIPEDPILAPNPDRFCMFPIQYPQIWEMYKKAEASFWTAEEVDLSQDQRHWESLTDGERHFITHVLAFFAASDGIVLENLAGRFMKEVQIAEARAFYGFQIAIENIHSEMYSLLLESYIKDSDQKNRLFRAIETIPCVEKKANWALRWIDGSESFAERIIAFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYGLLKTKVSEERVKGIVADAVEIEREFVCDALPCALVGMNGDLMSQYIEFVADRLLGALGCSKVYNVQNPFDWMELISLQGKTNFFEKRVGEYQKASVMSNLNGNGDSHVFKMDEDF 329
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Fro11g01656 329 Pfam Ribonucleotide reductase, small chain 16 282 IPR000358 GO:0009263(InterPro)
Fro11g01656 329 SUPERFAMILY Ferritin-like 4 307 IPR009078 -
Fro11g01656 329 ProSitePatterns Ribonucleotide reductase small subunit signature. 105 121 IPR030475 -
Fro11g01656 329 PANTHER RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE SMALL CHAIN 7 329 IPR000358 GO:0009263(InterPro)
Fro11g01656 329 CDD RNRR2 17 291 IPR033909 GO:0009263(InterPro)
Fro11g01656 329 Gene3D Ribonucleotide Reductase, subunit A 3 307 IPR012348 GO:0016491(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Fro11g01656 K10808 ribonucleoside-diphosphate reductase subunit M2 [EC:1.17.4.1]
Fro11g01656 K00526 ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
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Event-related genes

Select Gene_1 Gene_2 Event_name
92061 Fro11g01296 Fro11g01656
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Fro Fro-Chr17:10102165 Fro11g01656 Fro-Chr11:14988365 transposed
Fro Fro-Chr3:20874271 Fro11g01656 Fro-Chr11:14988365 transposed
Fro Fro-Chr11:11598802 Fro11g01656 Fro-Chr11:14988365 wgd
Fro Fro-Chr11:14988365 Fro8g01007 Fro-Chr8:8709119 wgd