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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Fro11g01657 ATGGAAATGCAACATGACTTTGATCGGCTTTTGTTTTTTGAGCATGCTCGCCGAAGCGCCGAAGAAACCTACAACACGAACCCTCTCGATACCGTGAACTTAACCCAATGGGGAGGGGCGTTGCTTGAATTGTCGACCTTCCAGAGTGTACAGGAATCAAAATTGATGATTAAAGATGCTATGTCAAAATTGGACGAAGCATTGTCGATTGATCCTAAGAAACATGATGCTTTGTGGTGTATGGGCAATGCACAAACTTCTTATGCTTTTTTGACTCCTGATAAAGATGAAGCCAAGGGTTATTTTGATTCAGCTTATGATTACTTTCAGCAGGCTGTTACTCTGGATCCAGGGAATGAGCTTTACCATAAATCATTTGAAGTGGCTTTAAAGGCTCCTGAATTACATTCAGAGCTCCATAAACAGGGTTTTAGTCAACAAGCTATGGGACCAGGACCAGGGGCTGGGGGAGGTCCTTCAACTTCTTCAAGTGTCAAGGGACCAAAGGCACAAAAGAGCAGCGATCTGAAGTATGAAATATTTGGATGGGTTATTCTTGCTGTAACTATCGTGGCATGGGTTGGATTTTCTAAAGCAAATGTACCTTCACCACCTCCCCGATAA 624 43.11 MEMQHDFDRLLFFEHARRSAEETYNTNPLDTVNLTQWGGALLELSTFQSVQESKLMIKDAMSKLDEALSIDPKKHDALWCMGNAQTSYAFLTPDKDEAKGYFDSAYDYFQQAVTLDPGNELYHKSFEVALKAPELHSELHKQGFSQQAMGPGPGAGGGPSTSSSVKGPKAQKSSDLKYEIFGWVILAVTIVAWVGFSKANVPSPPPR 207
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Fro11g01657 207 SUPERFAMILY TPR-like 13 130 IPR011990 GO:0005515(InterPro)
Fro11g01657 207 MobiDBLite consensus disorder prediction 144 169 - -
Fro11g01657 207 PANTHER MITOCHONDRIAL IMPORT RECEPTOR SUBUNIT TOM20-1-RELATED 1 206 IPR010547 GO:0005742(InterPro)|GO:0045040(InterPro)
Fro11g01657 207 Gene3D Tetratricopeptide repeat domain 1 149 IPR011990 GO:0005515(InterPro)
Fro11g01657 207 Pfam Plant specific mitochondrial import receptor subunit TOM20 7 198 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Fro11g01657 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Fro Fro-Chr11:14991336 Fro13g00019 Fro-Chr13:188547 dispersed
Fro Fro-Chr11:14991336 Fro13g00048 Fro-Chr13:674152 wgd
Fro Fro-Chr11:14991336 Fro8g01008 Fro-Chr8:8712532 wgd
Fro Fro-Chr11:14991336 Fro8g00454 Fro-Chr8:3636741 wgd