AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Fro12g02056 ATGAACACGAAGAAGATTCGTACGCCTGCAGAAGTGGTTCAAAAGACGCGATCCCTTCTCCTTTACTCCAAGAATTCTCTTGATGCCAACTCACAGATGACAGAATTGAACTCACTTATAAGGGAATTGAAGTTGATTCTTTATGGAGATGATAACTCAGAGCCTTCTGCAGAAGCTTGTGCACAGTTGACAGTTGAGTTCTATAGAGAAGATACATTGCGTCTGCTTATTATCTTTCTACCCAAGTTGAGCCTGGAGGCCCGTAAAGATGCCACGCAAGTGGTCGCGAGCTTGCAAAGGCAACCGTTGCCATCGCGATTCGAGGGGTCAAGATATTTGGAAGCTAATCTTGATCTTCTAGACATTCTCATATCCGGGTATGAGGATCCTCAATTGGCTCTTCATTATGGTAGGATGTTGAAGGAGTGCTTACGTCATCAGATTGCCGCAAGTTACTTGTTACAACCAAGTCAACTGGAGAAATTTTTTGGTTACATACAACATCCAAGTTTTGATATTGCTGCAGATGCTGCAGATGCATTCAAGGATCTTTTGACTAGACACAAGTCTACTGTGTCTGAATCTTTGTCCAAAAACTATTGCTGGTTTTTTACTGAAATGAACGAAAAGCTACTGAAATCTGAGAATTATATCACCAGAAGACAAGCCGTCAAGCTACTTGGATGCATATTGCTTGATCGCGCGAATTCTAGCGTTATGATGCGATACGTAAGCTCTAAAGATAACCTGATAATTCTAATGAATCTTCTAAGGGATCAAAGTAGGAACATTCAGATAGATGCTTTTCATGTATTCAAGCTTTTCGTAGCAAATGAAAATAAGCCTCGTGAAATAGTGAGCATACTTGTTACAAACAGAAGCAAGATTCTTCGTTTGCTTGGCGCTTTCGGTTATACAGAAGATGAAGTGTTTGAGACAGACAAGGTTCATGTGGTTAATAAACTAGCTGTACTAGAGCTTCAAGACTAA 990 40.51 MNTKKIRTPAEVVQKTRSLLLYSKNSLDANSQMTELNSLIRELKLILYGDDNSEPSAEACAQLTVEFYREDTLRLLIIFLPKLSLEARKDATQVVASLQRQPLPSRFEGSRYLEANLDLLDILISGYEDPQLALHYGRMLKECLRHQIAASYLLQPSQLEKFFGYIQHPSFDIAADAADAFKDLLTRHKSTVSESLSKNYCWFFTEMNEKLLKSENYITRRQAVKLLGCILLDRANSSVMMRYVSSKDNLIILMNLLRDQSRNIQIDAFHVFKLFVANENKPREIVSILVTNRSKILRLLGAFGYTEDEVFETDKVHVVNKLAVLELQD 329
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Fro12g02056 329 Pfam Mo25-like 4 325 IPR013878 -
Fro12g02056 329 PANTHER CALCIUM-BINDING PROTEIN 39-RELATED 4 326 IPR013878 GO:0035556(PANTHER)|GO:0043539(PANTHER)
Fro12g02056 329 Gene3D - 5 326 IPR011989 -
Fro12g02056 329 SUPERFAMILY ARM repeat 7 322 IPR016024 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Fro12g02056 K08272 calcium binding protein 39
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Fro Fro-Chr12:27827494 Fro9g01218 Fro-Chr9:25051308 dispersed
Fro Fro-Chr12:27827494 Fro16g01448 Fro-Chr16:23770459 transposed
Fro Fro-Chr12:27827494 Fro16g01569 Fro-Chr16:25684873 transposed