AGRP
Asteraceae Genomic Research Platform
Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Fro12g02060 | ATGGAGAACATACTCAACACCACCACCACCACCACCACCTTCTTCTCCGACGTACCCATCAACCTCGCCACCACCCACCGTCAGGTGGTTCCGATCACATTATTCGTCGCCGTCCTCTGCCTCTGTTTAGTTATCGGACACTTGCTTGATGAAAATCGATGGGTTAACGAGTCCATCACCGCCATCATCATCGGTTGTGTTGTTGGAACGATCATCTTATGCACGAGTAAATGGAAAAGCTCGCAGCTGTTGAGATTTGATGAAGAATTGTTCTTCATTTATCTTCTTCCACCTATAATCTTTAACGCAGGGTTTTCGGTGAAGAAGAAGCAGTTTTTCCATAACTTTTTTCCGATTATGTTGTTTGGTGTCACCGGAGTTTTCATATCTACTTCCATCGTTGCCGCCGGTTGCTGGTGGTTGTTCCCGAAATTGGGGCTCAATGGTTTGACTATCAGCGAGTATCTTAGTATAGGGACCATATTCTCATCTACAGATACTGTATGCACATTACAGGTTTTGCATCAAGACGAGACGCCTTTGCTATACAGTCTAGTTTTTGGTGAAGGAGTTGTAAATGATGCAACATCAGTTGTTCTCTTCAATGCGGTTCGGAAGATCACTGCAAGCACGCTTGGTGTCAAGGCTGCTCTTCGAATCGTATTAGATTTCTTGTATTTGTTCTTTACAAGCACTGTTCTTGGAGTTTCTGCCGGGCTTTTGACATCGTATATTCTCAGAGGTCTGGGCTTTGGAAGGCATTCAAGTGTACGTGAAATTTCTTTGATGATTCTGATAGCATATTTGTCCTACATGTTAGCAGAGTTATTTGAACTCAGTGGGATATTGACGGTCTTTTTTGCTGGAGTTCTGATGTCGCACTATGCGTGGCATAACGTAACTGAAAGCTCTAGAATTACAACCAGGCATGCTTTTGCAGCGTTCTCTTTTATTGCAGAAACATTCATATTTCTTTATGTGGGAATGGATGCACTGGACTATGAGAAGTGGAAAATGAGCATATTAAGTTTTTGGACTTCACTAGGCATATACAGCACTGTGATGATGTTGATATTACTTGGACGCGCTGCTTTCGTGTTTCCTCTTTCTTTATTTGCTAATTATATGCATAAAGGTGAGGACCCTTCATCAAAAATTACAGGACAACATCAGGTAGTAATATGGTGGGCAGGTCTGATGAGAGGCGCTGTCTCTGTCGCTTTGGCGTTCAAACAGTTTACGCTCTCTGGTGTGACACTTGATCCAATCAATGCGACAATGATCACCGCTACTACTGTTATCGTGCTATTCAGTACTGTTGTTTTTGGTTTTTTGACAAAACCGCTTATTAGATATCTTCTCCCTTCTAATACAAGTAACACCGGCCCATCCAGAACGACATCCCTCAAAGAGGATATCACACTTCCGTTACTTTCTTTTGAAGAATCCGCTTCTGAGAATCTCTCTAGAGCAAAAGAGAACATATCAATGCTAATGGAAAGACCTGTTTACACGATCCACTCCTATTGGAGGAGATTTGACGACACTTATATGCGACCTATATTCGGTGGGGCCCGCACCAACGACCTTTCGTAG | 1596 | 42.86 | MENILNTTTTTTTFFSDVPINLATTHRQVVPITLFVAVLCLCLVIGHLLDENRWVNESITAIIIGCVVGTIILCTSKWKSSQLLRFDEELFFIYLLPPIIFNAGFSVKKKQFFHNFFPIMLFGVTGVFISTSIVAAGCWWLFPKLGLNGLTISEYLSIGTIFSSTDTVCTLQVLHQDETPLLYSLVFGEGVVNDATSVVLFNAVRKITASTLGVKAALRIVLDFLYLFFTSTVLGVSAGLLTSYILRGLGFGRHSSVREISLMILIAYLSYMLAELFELSGILTVFFAGVLMSHYAWHNVTESSRITTRHAFAAFSFIAETFIFLYVGMDALDYEKWKMSILSFWTSLGIYSTVMMLILLGRAAFVFPLSLFANYMHKGEDPSSKITGQHQVVIWWAGLMRGAVSVALAFKQFTLSGVTLDPINATMITATTVIVLFSTVVFGFLTKPLIRYLLPSNTSNTGPSRTTSLKEDITLPLLSFEESASENLSRAKENISMLMERPVYTIHSYWRRFDDTYMRPIFGGARTNDLS | 531 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Fro12g02060 | 531 | NCBIfam | sodium-hydrogen exchanger 3 | 29 | 489 | IPR004709 | GO:0006814(InterPro)|GO:0006885(InterPro)|GO:0015385(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Fro12g02060 | 531 | Pfam | Sodium-hydrogen exchanger family | 46 | 450 | IPR006153 | GO:0006812(InterPro)|GO:0015297(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:1902600(InterPro) | |
| Fro12g02060 | 531 | PANTHER | SODIUM-HYDROGEN EXCHANGER | 28 | 526 | IPR018422 | GO:0005886(PANTHER)|GO:0006812(InterPro)|GO:0015385(PANTHER)|GO:0015385(InterPro)|GO:0015386(PANTHER)|GO:0016020(InterPro)|GO:0051453(PANTHER)|GO:0071805(PANTHER)|GO:0098719(PANTHER)|GO:1902600(InterPro) | |
| Fro12g02060 | 531 | Gene3D | - | 151 | 203 | - | - | |
| Fro12g02060 | 531 | PRINTS | Na+-H+ exchanger signature | 119 | 127 | IPR004709 | GO:0006814(InterPro)|GO:0006885(InterPro)|GO:0015385(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Fro12g02060 | 531 | PRINTS | Na+-H+ exchanger signature | 90 | 101 | IPR004709 | GO:0006814(InterPro)|GO:0006885(InterPro)|GO:0015385(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Fro12g02060 | 531 | PRINTS | Na+-H+ exchanger signature | 159 | 169 | IPR004709 | GO:0006814(InterPro)|GO:0006885(InterPro)|GO:0015385(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Fro12g02060 | 531 | PRINTS | Na+-H+ exchanger signature | 104 | 118 | IPR004709 | GO:0006814(InterPro)|GO:0006885(InterPro)|GO:0015385(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Fro12g02060 | 531 | Coils | Coil | 481 | 501 | - | - |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Fro12g02060 | - | - |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Fro | Fro-Chr12:27906013 | Fro2g00603 | Fro-Chr2:5641035 | dispersed | |
| Fro | Fro-Chr12:27906013 | Fro9g01414 | Fro-Chr9:26898767 | wgd |
| Select | Gene | Event_type | S_start | S_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|---|
| Fro2g00122 | ACH,WGDA | 6 | 798 | Antiporters gene family | AT4G23700 | 64.232 | 0.0 | 1022.0 | |
| Fro2g00123 | . | 1 | 810 | Antiporters gene family | AT5G41610 | 65.437 | 0.0 | 1031.0 | |
| Fro2g00206 | WGDA | 30 | 283 | Antiporters gene family | AT1G79900 | 33.935 | 6.57e-42 | 144.0 | |
| Fro2g00603 | WGDA | 13 | 543 | Antiporters gene family | AT3G05030 | 73.446 | 0.0 | 814.0 | |
| Fro2g01119 | . | 3 | 438 | Antiporters gene family | AT3G51860 | 69.635 | 0.0 | 571.0 | |
| Fro2g01583 | . | 9 | 576 | Antiporters gene family | AT3G19490 | 77.682 | 0.0 | 829.0 | |
| Fro4g00651 | . | 47 | 437 | Antiporters gene family | AT1G55730 | 71.355 | 0.0 | 577.0 | |
| Fro4g00821 | . | 7 | 563 | Antiporters gene family | AT5G64290 | 71.02 | 0.0 | 782.0 | |
| Fro4g01453 | . | 44 | 566 | Antiporters gene family | AT5G17860 | 42.959 | 2.69e-142 | 423.0 | |
| Fro4g01496 | . | 23 | 439 | Antiporters gene family | AT3G13320 | 69.575 | 0.0 | 599.0 | |
| Fro5g00499 | WGDA | 1 | 776 | Antiporters gene family | AT1G16380 | 38.832 | 0.0 | 555.0 | |
| Fro5g00749 | ACH | 56 | 377 | Antiporters gene family | AT3G01550 | 69.04 | 1.17e-159 | 453.0 | |
| Fro5g00837 | WGDA | 1 | 383 | Antiporters gene family | AT5G13490 | 76.501 | 0.0 | 565.0 | |
| Fro5g00892 | . | 1 | 826 | Antiporters gene family | AT3G53720 | 66.063 | 0.0 | 1034.0 | |
| Fro6g00965 | ACH,WGDA | 1 | 687 | Antiporters gene family | AT3G62270 | 76.403 | 0.0 | 1087.0 | |
| Fro6g01077 | ACH,WGDA | 1 | 387 | Antiporters gene family | AT5G54800 | 72.414 | 0.0 | 556.0 | |
| Fro7g00929 | WGDA | 26 | 563 | Antiporters gene family | AT5G64290 | 77.138 | 0.0 | 818.0 | |
| Fro7g01350 | WGDA | 44 | 590 | Antiporters gene family | AT2G19600 | 81.193 | 0.0 | 855.0 | |
| Fro8g00544 | WGDA | 7 | 543 | Antiporters gene family | AT3G05030 | 73.655 | 0.0 | 803.0 | |
| Fro8g00576 | . | 10 | 298 | Antiporters gene family | AT5G17400 | 37.966 | 3.74e-64 | 203.0 | |
| Fro8g00716 | WGDA | 30 | 180 | Antiporters gene family | AT1G79900 | 30.108 | 3.83e-18 | 79.0 | |
| Fro8g00747 | ACH,WGDA | 1 | 786 | Antiporters gene family | AT5G41610 | 65.823 | 0.0 | 1000.0 | |
| Fro8g01413 | ACH | 14 | 773 | Antiporters gene family | AT1G79400 | 36.999 | 5.49e-170 | 508.0 | |
| Fro8g01491 | ACH | 14 | 773 | Antiporters gene family | AT1G79400 | 37.128 | 1.30e-170 | 509.0 | |
| Fro8g01964 | . | 33 | 972 | Antiporters gene family | AT2G01980 | 62.116 | 0.0 | 1130.0 | |
| Fro9g00060 | WGDA | 108 | 226 | Antiporters gene family | AT5G11800 | 84.874 | 6.11e-65 | 207.0 | |
| Fro9g00063 | . | 219 | 591 | Antiporters gene family | AT2G19600 | 80.429 | 0.0 | 555.0 | |
| Fro9g00957 | . | 92 | 563 | Antiporters gene family | AT5G64290 | 83.263 | 0.0 | 813.0 | |
| Fro9g01378 | ACH | 45 | 388 | Antiporters gene family | AT1G61800 | 76.923 | 0.0 | 551.0 | |
| Fro9g01414 | . | 9 | 526 | Antiporters gene family | AT5G55470 | 68.34 | 0.0 | 726.0 | |
| Fro9g01574 | . | 13 | 542 | Antiporters gene family | AT3G05030 | 74.906 | 0.0 | 823.0 | |
| Fro9g01621 | . | 1 | 407 | Antiporters gene family | AT5G17630 | 70.976 | 0.0 | 550.0 | |
| Fro9g01722 | . | 30 | 283 | Antiporters gene family | AT1G79900 | 32.042 | 1.03e-40 | 141.0 | |
| Fro9g01817 | ACH | 6 | 795 | Antiporters gene family | AT4G23700 | 63.636 | 0.0 | 998.0 | |
| Fro10g00354 | . | 13 | 476 | Antiporters gene family | AT3G05030 | 32.573 | 1.24e-54 | 191.0 | |
| Fro10g00618 | WGDA | 1 | 384 | Antiporters gene family | AT5G13490 | 75.194 | 0.0 | 560.0 | |
| Fro11g00131 | ACH | 1 | 296 | Antiporters gene family | AT1G79900 | 68.627 | 1.18e-145 | 410.0 | |
| Fro11g00169 | ACH | 10 | 672 | Antiporters gene family | AT1G15460 | 69.91 | 0.0 | 974.0 | |
| Fro11g00371 | ACH | 1 | 687 | Antiporters gene family | AT3G62270 | 75.358 | 0.0 | 1074.0 | |
| Fro11g00497 | . | 6 | 302 | Antiporters gene family | AT5G17400 | 73.737 | 1.35e-162 | 452.0 | |
| Fro11g01785 | . | 33 | 1142 | Antiporters gene family | AT2G01980 | 63.604 | 0.0 | 1362.0 | |
| Fro11g01791 | . | 93 | 563 | Antiporters gene family | AT5G64290 | 71.762 | 0.0 | 702.0 | |
| Fro11g02095 | . | 25 | 388 | Antiporters gene family | AT1G61800 | 73.28 | 0.0 | 540.0 | |
| Fro12g00895 | . | 58 | 564 | Antiporters gene family | AT5G17860 | 42.315 | 1.13e-143 | 427.0 | |
| Fro12g01729 | . | 37 | 844 | Antiporters gene family | AT5G37060 | 42.875 | 0.0 | 691.0 | |
| Fro12g02060 | . | 12 | 525 | Antiporters gene family | AT5G55470 | 70.039 | 0.0 | 739.0 | |
| Fro13g00137 | . | 83 | 405 | Antiporters gene family | AT5G46110 | 80.0 | 0.0 | 543.0 | |
| Fro13g00631 | WGDA | 1 | 233 | Antiporters gene family | AT5G13490 | 69.362 | 3.85e-107 | 313.0 | |
| Fro13g01248 | . | 62 | 440 | Antiporters gene family | AT2G38170 | 63.061 | 2.65e-161 | 461.0 | |
| Fro13g01426 | . | 24 | 801 | Antiporters gene family | AT3G52080 | 45.443 | 0.0 | 709.0 | |
| Fro13g01521 | . | 1 | 410 | Antiporters gene family | AT5G46110 | 76.683 | 0.0 | 624.0 | |
| Fro13g01522 | . | 1 | 410 | Antiporters gene family | AT5G46110 | 76.923 | 0.0 | 635.0 | |
| Fro13g01666 | . | 26 | 380 | Antiporters gene family | AT5G13490 | 78.371 | 0.0 | 552.0 | |
| Fro14g00019 | . | 9 | 656 | Antiporters gene family | AT5G25430 | 65.138 | 0.0 | 881.0 | |
| Fro14g00391 | . | 1 | 557 | Antiporters gene family | AT5G12860 | 82.06 | 0.0 | 888.0 | |
| Fro14g00939 | . | 30 | 283 | Antiporters gene family | AT1G79900 | 28.623 | 1.09e-33 | 123.0 | |
| Fro14g01156 | . | 5 | 440 | Antiporters gene family | AT2G38170 | 59.729 | 5.11e-179 | 507.0 | |
| Fro14g01282 | . | 23 | 539 | Antiporters gene family | AT2G47600 | 68.906 | 0.0 | 731.0 | |
| Fro14g01322 | ACH | 8 | 534 | Antiporters gene family | AT3G05030 | 62.949 | 0.0 | 666.0 | |
| Fro15g01345 | ACH,WGDA | 1 | 776 | Antiporters gene family | AT1G16380 | 39.467 | 0.0 | 558.0 | |
| Fro15g01820 | WGDA | 1 | 383 | Antiporters gene family | AT5G13490 | 76.762 | 0.0 | 565.0 | |
| Fro16g00202 | . | 6 | 811 | Antiporters gene family | AT2G13620 | 70.471 | 0.0 | 1129.0 | |
| Fro16g00249 | ACH,WGDA | 47 | 388 | Antiporters gene family | AT1G61800 | 76.901 | 0.0 | 547.0 | |
| Fro16g00270 | . | 47 | 388 | Antiporters gene family | AT1G61800 | 76.901 | 0.0 | 551.0 | |
| Fro16g00513 | ACH | 7 | 404 | Antiporters gene family | AT5G33320 | 65.196 | 5.43e-178 | 500.0 | |
| Fro16g00515 | ACH,WGDA | 1 | 687 | Antiporters gene family | AT3G62270 | 76.293 | 0.0 | 1080.0 | |
| Fro16g01192 | . | 6 | 654 | Antiporters gene family | AT1G15460 | 66.208 | 0.0 | 909.0 | |
| Fro16g01431 | . | 52 | 584 | Antiporters gene family | AT2G19600 | 82.189 | 0.0 | 859.0 | |
| Fro16g01586 | . | 52 | 584 | Antiporters gene family | AT2G19600 | 82.004 | 0.0 | 857.0 | |
| Fro16g02318 | . | 67 | 566 | Antiporters gene family | AT5G17860 | 48.054 | 8.92e-164 | 478.0 | |
| Fro16g02435 | . | 67 | 566 | Antiporters gene family | AT5G17860 | 48.054 | 2.68e-164 | 478.0 | |
| Fro17g00149 | . | 1 | 697 | Antiporters gene family | AT2G47160 | 80.0 | 0.0 | 1144.0 | |
| Fro17g00208 | ACH | 7 | 534 | Antiporters gene family | AT3G05030 | 62.311 | 0.0 | 662.0 | |
| Fro17g01387 | . | 94 | 372 | Antiporters gene family | AT5G64290 | 66.308 | 1.03e-134 | 392.0 | |
| Fro17g01446 | . | 64 | 404 | Antiporters gene family | AT5G33320 | 64.841 | 4.81e-154 | 439.0 | |
| Fro17g01456 | ACH | 139 | 402 | Antiporters gene family | AT5G33320 | 71.212 | 4.84e-132 | 378.0 | |
| Fro18g00958 | ACH | 10 | 619 | Antiporters gene family | AT1G15460 | 70.656 | 0.0 | 910.0 | |
| Fro18g00978 | ACH | 1 | 287 | Antiporters gene family | AT1G79900 | 63.636 | 3.26e-129 | 367.0 | |
| Fro18g01023 | . | 21 | 568 | Antiporters gene family | AT5G51710 | 76.46 | 0.0 | 848.0 | |
| Fro10000174.1g00008 | . | 7 | 542 | Antiporters gene family | AT3G05030 | 73.234 | 0.0 | 811.0 | |
| Fro10000195.1g00008 | . | 65 | 414 | Antiporters gene family | AT5G17630 | 76.836 | 0.0 | 542.0 | |
| Fro10000196.1g00006 | . | 65 | 407 | Antiporters gene family | AT5G17630 | 77.81 | 0.0 | 541.0 |