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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Fro12g02167 ATGGTAGTTGTTAAGGGTTTAAGCACGTTCAAGAGTAGGGTTTCGGGAGAACGAGACATCAGGAAGAGTGGTGGATTTAGAAGTTTGAAGGTGTATACAGAAGATGCTAAGGTGAAGATTAATGGTCGGGATCATGTTGTGGCTGAAACTAAAAGGAAATCTATTCCAGTCAAAGCTGAATCTAGTCATATCCAGGCCAATTGTCAAAAGGAGGCTCTCAACAAGTTGGATAAGATTAACGGGAAAAGCATCAACTCTGCTCAAACAAAAGTAGGAAGAAAAGTATTGGCAGATATCAGCAATTCCAAGGGTGTTTTTCAGAAGAATGCAACTGTTGATGGCTCCAAACCTGGGAAAGGTAAAACGGAAAGGATGACATATTCACAACGGACCTCAGTGTCATCAGCCAAGGATCTGAAGGTTTTCAATGGTAATTCAAAGATAAAAGATCAAGAAACTGTTGGTTATGTAACAAGGAAATCTACAAGGAGTTATTGCCCACCACAAAGGAAATCTTTACCAGTTCTAAAGAATGTTGACAAGAAGGAGATATCTGATATCAAGAAAGGAAATAAGGATAATAACTTGAACAAGGGAACACATGGCTTCTTTGTTAAACCTAAAGTTGGCCCGACAATTGTACCACAAGTAAGCAATACTAGGGACTACCGTTGGAAGAATAGAGTTAGTGATGGATGCATAAAAATGCCATCAGATGGTCAACAAGCAGGGGACAAACAGAGACGACTGTCTAGAATATCAATGAAGCCAACCGTGAAAACAACAGTTGGCATTCCCAAAGCTCAAAGGCCATCAAGAACCACTTCTGTTTTTACCAAAGCTCAAAGGCCGTCGAGAAGCACTTCTGTTTTTACCAAAGCTCAAATGCCTTCAAGAACCACTTCTGTTTTTACTAAATCGACATCTACCGCTTCAGTATTATCTAAAAAAACTGAAGAAACATCAAAGTCTGAATCTATTTCTTGTAAGCAAATTGCACAAGGAGTCACATTAGATACTAGTACATCGAAACTCACTGCCAAGGGGAAATCTGGTCGCCGAAAATCCTACACATCTTTACTAATGGAAAGAACAAAGCTTCTAAAGGATCGGGGTAGTGTCACCAAGGAGGAGATCCTGCCCGAAATTTATGATGATGGCAATGAGCTTGAAGTTGCTGAGTATGTTGATGAGATCTATCAGCACTATTGGGTCACAGAGGCACATAATCAACCACTGAAAAACTATATGGAGATCCAAACAGACATCACTCCTCAAATGCGGGGCATACTGATCAATTGGCTAATAGAAGTACATCTGAAGTTTGACTTAATGCAAGAGACGCTTTATCTGATGGTCACACTTTTAGACTTTTACTTGTCTGCTGTCACAATTAAGAAAACTGAAATGCAACTAGTTGGTCTCACATCACTGTTACTAGCATCAAAGTATGAAGATTTTTGGCATCCACAGGTTATGGAATTAATTAGTATCTCTGCAGAGACATACACAAGAGAGCAAATGCTTGGAATGGAGACGACGATCTTAAAGCAGCTAGATTTCCGACTTAATTTGCCTACACCTTACGTTTTCATGCTGAGATTTCTTAGAGCTGCACAGGGAGGCAAAAAGTTTGAAAACCTAGCATACTTCCTCATTGAGCTGTGCTTGGTGGAATATGATGCCTTACACTACAAACCATCATTACTATGTGCATCAGCTATATATGTTGCTAGATGTACCCTGCATTTGGCCCCAGCATGGACCCCACTTCTAAGCAAACATTCTAAGTATCAAGAATTTCAAATCAGGGATTGTGCTGAGATGATCTTGGGATTTCACCAAGCTGCAAGGAAATCAGTTCTAAAAGTGACATATGACAAATACACGCGCGATAAAAACTGCAAAGTCGCACTGATCAAACCTCTCGACAGGCTTCCACCTCCTTAG 1950 40.26 MVVVKGLSTFKSRVSGERDIRKSGGFRSLKVYTEDAKVKINGRDHVVAETKRKSIPVKAESSHIQANCQKEALNKLDKINGKSINSAQTKVGRKVLADISNSKGVFQKNATVDGSKPGKGKTERMTYSQRTSVSSAKDLKVFNGNSKIKDQETVGYVTRKSTRSYCPPQRKSLPVLKNVDKKEISDIKKGNKDNNLNKGTHGFFVKPKVGPTIVPQVSNTRDYRWKNRVSDGCIKMPSDGQQAGDKQRRLSRISMKPTVKTTVGIPKAQRPSRTTSVFTKAQRPSRSTSVFTKAQMPSRTTSVFTKSTSTASVLSKKTEETSKSESISCKQIAQGVTLDTSTSKLTAKGKSGRRKSYTSLLMERTKLLKDRGSVTKEEILPEIYDDGNELEVAEYVDEIYQHYWVTEAHNQPLKNYMEIQTDITPQMRGILINWLIEVHLKFDLMQETLYLMVTLLDFYLSAVTIKKTEMQLVGLTSLLLASKYEDFWHPQVMELISISAETYTREQMLGMETTILKQLDFRLNLPTPYVFMLRFLRAAQGGKKFENLAYFLIELCLVEYDALHYKPSLLCASAIYVARCTLHLAPAWTPLLSKHSKYQEFQIRDCAEMILGFHQAARKSVLKVTYDKYTRDKNCKVALIKPLDRLPPP 649
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Fro12g02167 649 Pfam Cyclin, C-terminal domain 526 642 IPR004367 -
Fro12g02167 649 FunFam putative cyclin-B3-1 isoform X3 522 647 - -
Fro12g02167 649 FunFam Cyclin N-terminal domain containing 2 413 521 - -
Fro12g02167 649 PANTHER CYCLINS 381 629 IPR039361 GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER)
Fro12g02167 649 MobiDBLite consensus disorder prediction 267 310 - -
Fro12g02167 649 SUPERFAMILY Cyclin-like 526 645 IPR036915 -
Fro12g02167 649 SUPERFAMILY Cyclin-like 388 524 IPR036915 -
Fro12g02167 649 Pfam Cyclin, N-terminal domain 398 524 IPR006671 -
Fro12g02167 649 CDD CYCLIN-CCNB1-like-rpt1 392 521 - -
Fro12g02167 649 Gene3D - 413 517 - -
Fro12g02167 649 SMART Cyclin-C-2 526 643 IPR004367 -
Fro12g02167 649 SMART cyclin-7 433 517 IPR013763 -
Fro12g02167 649 SMART cyclin-7 530 612 IPR013763 -
Fro12g02167 649 Gene3D - 518 647 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Fro12g02167 K21777 G2/mitotic-specific cyclin-B, other
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Fro Fro-Chr12:29099800 Fro7g00207 Fro-Chr7:3187357 dispersed
Fro Fro-Chr12:29099800 Fro15g00042 Fro-Chr15:816881 transposed
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Fro1g00543 . 20 425 Core Cell Cycle gene family AT5G10270 40.633 1.24e-95 300.0
Fro1g00745 ACH,WGDA 1 366 Core Cell Cycle gene family AT5G67260 44.416 7.73e-96 288.0
Fro1g00929 WGDA 60 274 Core Cell Cycle gene family AT3G50070 47.926 9.21e-63 201.0
Fro1g01123 . 19 304 Core Cell Cycle gene family AT1G76540 25.749 1.73e-26 107.0
Fro1g01141 . 21 333 Core Cell Cycle gene family AT5G10270 46.25 1.29e-85 274.0
Fro1g01181 . 18 367 Core Cell Cycle gene family AT5G10270 51.989 1.66e-118 358.0
Fro2g00349 . 20 312 Core Cell Cycle gene family AT1G76540 34.915 2.45e-58 192.0
Fro2g00510 . 1 982 Core Cell Cycle gene family AT3G12280 67.8 0.0 1356.0
Fro2g00716 ACH,WGDA 1 222 Core Cell Cycle gene family AT5G48820 46.186 3.52e-53 169.0
Fro2g00975 . 1 317 Core Cell Cycle gene family AT5G27620 59.875 1.39e-136 389.0
Fro2g01567 . 150 195 Core Cell Cycle gene family AT1G49620 69.565 4.29e-20 81.3
Fro2g01582 . 14 282 Core Cell Cycle gene family AT4G34160 50.173 8.48e-92 278.0
Fro3g00316 . 8 302 Core Cell Cycle gene family AT3G54180 25.519 1.42e-12 67.0
Fro3g00468 . 11 309 Core Cell Cycle gene family AT1G20930 86.957 0.0 556.0
Fro3g00508 WGDA 20 306 Core Cell Cycle gene family AT1G20930 29.114 9.33e-28 113.0
Fro3g00811 . 18 373 Core Cell Cycle gene family AT5G10270 50.418 3.21e-115 352.0
Fro3g00893 . 52 291 Core Cell Cycle gene family AT1G70210 42.798 5.90e-54 177.0
Fro3g01106 ACH,WGDA 150 195 Core Cell Cycle gene family AT1G49620 69.565 9.19e-20 81.3
Fro4g00720 ACH,WGDA 90 195 Core Cell Cycle gene family AT1G49620 44.248 4.10e-22 87.8
Fro4g00761 . 6 354 Core Cell Cycle gene family AT5G43080 50.986 7.20e-119 346.0
Fro4g00903 . 20 312 Core Cell Cycle gene family AT1G76540 34.228 4.63e-55 183.0
Fro5g00310 WGDA 1 430 Core Cell Cycle gene family AT1G76310 58.277 1.82e-169 480.0
Fro5g00604 WGDA 7 322 Core Cell Cycle gene family AT4G37630 33.934 1.64e-47 160.0
Fro6g00070 . 1 220 Core Cell Cycle gene family AT5G48820 38.298 6.86e-37 127.0
Fro6g00633 WGDA 1 434 Core Cell Cycle gene family AT5G25380 50.529 2.53e-149 431.0
Fro6g00894 . 18 364 Core Cell Cycle gene family AT5G10270 46.418 5.41e-104 323.0
Fro6g01252 WGDA 70 338 Core Cell Cycle gene family AT2G22490 48.162 6.01e-69 217.0
Fro7g00038 . 20 312 Core Cell Cycle gene family AT1G76540 34.576 1.03e-55 186.0
Fro7g00207 . 18 377 Core Cell Cycle gene family AT2G26760 53.488 8.75e-140 402.0
Fro7g00294 . 164 287 Core Cell Cycle gene family AT3G48750 33.103 3.05e-11 60.8
Fro7g00295 . 2 223 Core Cell Cycle gene family AT4G28980 26.201 6.98e-12 66.6
Fro7g00541 . 18 363 Core Cell Cycle gene family AT5G10270 51.873 7.06e-119 359.0
Fro7g00557 . 18 363 Core Cell Cycle gene family AT5G10270 51.873 8.57e-119 359.0
Fro8g00324 . 18 447 Core Cell Cycle gene family AT5G10270 47.696 1.74e-124 375.0
Fro8g00547 . 1 434 Core Cell Cycle gene family AT5G25380 50.0 1.80e-140 408.0
Fro8g00573 . 18 363 Core Cell Cycle gene family AT5G10270 51.297 6.28e-119 359.0
Fro8g01238 ACH,WGDA 3 358 Core Cell Cycle gene family AT5G67260 41.979 1.81e-89 272.0
Fro8g01556 . 12 425 Core Cell Cycle gene family AT2G17620 58.768 3.26e-157 449.0
Fro8g02039 . 18 470 Core Cell Cycle gene family AT5G63610 76.17 0.0 716.0
Fro9g00112 . 8 478 Core Cell Cycle gene family AT4G28980 56.394 0.0 528.0
Fro9g00612 . 223 365 Core Cell Cycle gene family AT1G76310 24.691 9.55e-06 45.4
Fro9g00841 . 18 391 Core Cell Cycle gene family AT5G64960 48.806 5.59e-118 361.0
Fro9g00849 . 20 312 Core Cell Cycle gene family AT1G76540 34.237 3.92e-55 183.0
Fro9g01548 . 18 363 Core Cell Cycle gene family AT5G10270 52.161 9.45e-121 364.0
Fro9g01610 . 1 294 Core Cell Cycle gene family AT3G48750 36.364 1.04e-66 214.0
Fro10g00781 . 1 294 Core Cell Cycle gene family AT3G48750 86.054 0.0 535.0
Fro10g01225 . 12 339 Core Cell Cycle gene family AT1G70210 60.299 1.66e-132 379.0
Fro11g00145 . 19 459 Core Cell Cycle gene family AT1G80370 52.009 7.08e-143 414.0
Fro11g00268 . 18 357 Core Cell Cycle gene family AT5G10270 51.906 2.98e-116 353.0
Fro11g00317 . 5 310 Core Cell Cycle gene family AT1G20930 46.032 4.75e-86 268.0
Fro11g00657 ACH,WGDA 18 286 Core Cell Cycle gene family AT4G34160 47.079 2.72e-81 250.0
Fro11g00664 ACH 1 353 Core Cell Cycle gene family AT5G43080 57.418 1.17e-146 417.0
Fro11g00950 ACH,WGDA 1 367 Core Cell Cycle gene family AT5G67260 43.194 1.84e-93 282.0
Fro11g00991 ACH 175 222 Core Cell Cycle gene family AT5G48820 60.417 4.71e-17 74.7
Fro11g01116 . 18 349 Core Cell Cycle gene family AT5G10270 46.386 6.42e-100 311.0
Fro11g01774 . 1 479 Core Cell Cycle gene family AT5G10270 77.066 0.0 734.0
Fro11g01947 ACH 20 414 Core Cell Cycle gene family AT1G20610 54.364 1.55e-145 418.0
Fro11g02015 ACH,WGDA 63 346 Core Cell Cycle gene family AT5G67260 48.311 5.66e-89 270.0
Fro11g02496 . 76 292 Core Cell Cycle gene family AT2G22490 51.364 4.76e-65 207.0
Fro12g00516 . 10 290 Core Cell Cycle gene family AT3G48750 36.644 3.28e-56 184.0
Fro12g00818 ACH,WGDA 1 222 Core Cell Cycle gene family AT5G48820 42.917 1.62e-49 160.0
Fro12g00840 ACH 55 273 Core Cell Cycle gene family AT5G27620 24.017 5.45e-13 65.9
Fro12g02167 . 22 647 Core Cell Cycle gene family AT1G16330 43.902 1.22e-155 461.0
Fro12g02274 . 18 379 Core Cell Cycle gene family AT5G10270 52.186 9.98e-121 367.0
Fro12g02301 . 18 379 Core Cell Cycle gene family AT5G10270 52.186 9.98e-121 367.0
Fro12g02582 ACH 89 195 Core Cell Cycle gene family AT1G49620 42.742 4.60e-25 95.9
Fro13g00345 . 177 392 Core Cell Cycle gene family AT1G20610 30.455 2.27e-19 89.0
Fro13g00384 . 190 399 Core Cell Cycle gene family AT5G06150 29.148 3.53e-21 94.7
Fro13g01114 . 1 434 Core Cell Cycle gene family AT5G06150 52.505 2.18e-152 438.0
Fro13g01130 . 4 289 Core Cell Cycle gene family AT5G02110 28.669 2.25e-32 122.0
Fro13g01500 . 10 290 Core Cell Cycle gene family AT3G48750 35.739 1.20e-56 185.0
Fro13g01702 WGDA 1 80 Core Cell Cycle gene family AT2G27970 89.024 1.32e-49 149.0
Fro13g01810 WGDA 14 304 Core Cell Cycle gene family AT1G76540 26.316 1.58e-28 112.0
Fro14g00198 WGDA 14 304 Core Cell Cycle gene family AT1G76540 26.239 8.44e-28 110.0
Fro14g00330 WGDA 1 82 Core Cell Cycle gene family AT2G27960 96.341 3.49e-57 169.0
Fro14g01241 . 2 309 Core Cell Cycle gene family AT3G54180 81.818 0.0 526.0
Fro14g01376 . 1 294 Core Cell Cycle gene family AT3G48750 36.093 2.13e-60 194.0
Fro14g01377 . 1 294 Core Cell Cycle gene family AT3G48750 36.455 8.79e-61 195.0
Fro14g01495 ACH 1 221 Core Cell Cycle gene family AT5G48820 43.882 6.05e-42 140.0
Fro14g01512 ACH 99 239 Core Cell Cycle gene family AT5G27620 28.667 5.77e-10 57.0
Fro14g01753 . 1 287 Core Cell Cycle gene family AT3G48750 35.986 4.37e-58 188.0
Fro14g01869 . 203 437 Core Cell Cycle gene family AT5G06150 59.514 1.13e-101 301.0
Fro14g01870 . 20 139 Core Cell Cycle gene family AT3G11520 41.791 6.47e-15 69.3
Fro14g01945 . 203 437 Core Cell Cycle gene family AT5G06150 59.514 1.13e-101 301.0
Fro14g01946 . 20 139 Core Cell Cycle gene family AT3G11520 41.791 5.49e-15 69.3
Fro15g00042 . 1 430 Core Cell Cycle gene family AT1G76310 60.592 1.34e-171 486.0
Fro15g00043 WGDA 1 430 Core Cell Cycle gene family AT1G76310 60.731 2.63e-172 487.0
Fro15g01334 ACH 1 429 Core Cell Cycle gene family AT1G20610 51.253 1.08e-148 427.0
Fro15g01479 WGDA 7 318 Core Cell Cycle gene family AT4G37630 32.915 5.55e-46 156.0
Fro15g01484 . 12 304 Core Cell Cycle gene family AT1G76540 31.31 1.62e-41 147.0
Fro15g01491 . 12 304 Core Cell Cycle gene family AT1G76540 29.773 8.35e-43 150.0
Fro15g01523 ACH 150 195 Core Cell Cycle gene family AT1G49620 54.348 2.06e-15 69.7
Fro15g01580 . 18 349 Core Cell Cycle gene family AT5G10270 47.289 1.91e-98 306.0
Fro16g00028 WGDA 42 302 Core Cell Cycle gene family AT5G65420 46.468 1.18e-76 236.0
Fro16g00082 . 21 412 Core Cell Cycle gene family AT5G10270 43.781 3.96e-101 315.0
Fro16g00411 . 18 366 Core Cell Cycle gene family AT5G10270 52.286 2.84e-117 355.0
Fro16g00434 . 18 366 Core Cell Cycle gene family AT5G10270 52.286 2.84e-117 355.0
Fro16g00620 . 75 266 Core Cell Cycle gene family AT5G27620 23.789 4.31e-08 52.8
Fro16g00797 . 75 265 Core Cell Cycle gene family AT5G27620 23.894 1.13e-07 51.6
Fro16g00997 . 55 147 Core Cell Cycle gene family AT3G50070 46.316 2.15e-19 82.0
Fro16g01081 . 20 459 Core Cell Cycle gene family AT1G44110 59.831 0.0 546.0
Fro16g01387 . 3 301 Core Cell Cycle gene family AT3G54180 28.242 5.87e-30 115.0
Fro16g01402 WGDA 1 431 Core Cell Cycle gene family AT5G25380 48.632 7.35e-143 415.0
Fro16g01472 . 1 294 Core Cell Cycle gene family AT3G48750 38.176 3.74e-69 219.0
Fro16g01567 . 1 294 Core Cell Cycle gene family AT3G48750 37.5 1.04e-67 216.0
Fro16g01610 . 3 301 Core Cell Cycle gene family AT3G54180 28.242 6.49e-30 115.0
Fro17g00137 . 6 391 Core Cell Cycle gene family AT1G18040 76.726 0.0 599.0
Fro17g00826 . 44 302 Core Cell Cycle gene family AT5G65420 46.468 4.29e-72 224.0
Fro17g01122 . 18 357 Core Cell Cycle gene family AT5G10270 48.105 1.21e-103 323.0
Fro17g01341 ACH,WGDA 3 354 Core Cell Cycle gene family AT5G43080 57.527 1.56e-151 429.0
Fro18g00071 . 6 391 Core Cell Cycle gene family AT1G18040 76.684 0.0 596.0
Fro18g00787 ACH,WGDA 1 353 Core Cell Cycle gene family AT5G43080 59.563 1.07e-152 432.0
Fro18g00820 . 18 364 Core Cell Cycle gene family AT5G10270 47.714 4.50e-111 340.0
Fro18g00866 . 19 304 Core Cell Cycle gene family AT1G76540 25.519 8.57e-26 105.0
Fro18g01414 . 17 371 Core Cell Cycle gene family AT5G64960 44.78 6.95e-94 301.0
Fro18g01859 . 11 315 Core Cell Cycle gene family AT1G20930 86.885 0.0 559.0
Fro10000172.1g00005 . 1 290 Core Cell Cycle gene family AT3G48750 36.177 6.74e-66 211.0
Fro10000165.1g00002 . 75 244 Core Cell Cycle gene family AT5G27620 24.084 2.85e-06 47.4
Fro10000372.1g00007 . 11 315 Core Cell Cycle gene family AT1G20930 86.885 0.0 559.0
Fro10000252.1g00003 . 89 195 Core Cell Cycle gene family AT1G49620 43.089 1.88e-25 96.7
Fro10000246.1g00007 . 10 280 Core Cell Cycle gene family AT4G34160 51.786 9.61e-96 288.0
Fro10000309.1g00008 . 1 220 Core Cell Cycle gene family AT5G48820 42.917 5.26e-45 148.0
Fro10000300.1g00008 . 1 100 Core Cell Cycle gene family AT5G48820 44.444 2.39e-10 55.1
Fro10000300.1g00009 . 249 289 Core Cell Cycle gene family AT2G32710 70.732 3.18e-17 70.1
Fro10000176.1g00012 . 20 312 Core Cell Cycle gene family AT1G76540 34.576 1.03e-55 186.0
Fro10000458.1g00001 . 20 459 Core Cell Cycle gene family AT1G44110 59.362 0.0 546.0