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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Fro12g02295 ATGGCCGGAGTTCTCGAAACCCTCACCGTCCCTCGCGCCACCGGAGCTCCGACGGCCTCTATAACTCCGATCACCTCTTCTCCGGTCTCTCAACTCTTCCTTCGCCGGAGCTTTCTGCCGGAATCCAGAGGCTCCAAGTTAAATATCAATTCCTACCGTTCGTCTGGATCCGTGAGATTGAGGTCGAACTTCGATCGTCGTGGTGGACGAATCGTATGCGAAGCACAGGAAGCAGCCGTACAAGTGCTTCCTGTGACTGATGGAGCATGGCAATCACTTGTTCTGGATTCTGATCTTCCTGTACTGGTTGAGTTTTGGGCTCCATGGTGCGGGCCATGTCGCATGATCCACCCGATCATTGACGAACTCGCGAAAGAGTTCAACGGCAAGCTCGCTTGTTACAAGGTGAATACCGATGAGAGTCCTTCAATCGCTACCAGATATGGTATTAGAAGCATCCCAACTGTCATCATCTTCAAAGGTGGAGAGAAGAAAGAAGCAGTAATTGGTGCTGTTCCAAAATCAACTCTGTCTACCTGCATTCAGAAGTTTTTATAA 558 50.0 MAGVLETLTVPRATGAPTASITPITSSPVSQLFLRRSFLPESRGSKLNINSYRSSGSVRLRSNFDRRGGRIVCEAQEAAVQVLPVTDGAWQSLVLDSDLPVLVEFWAPWCGPCRMIHPIIDELAKEFNGKLACYKVNTDESPSIATRYGIRSIPTVIIFKGGEKKEAVIGAVPKSTLSTCIQKFL 185
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Fro12g02295 185 Pfam Thioredoxin 82 182 IPR013766 -
Fro12g02295 185 PRINTS Thioredoxin family signature 101 109 - -
Fro12g02295 185 PRINTS Thioredoxin family signature 109 118 - -
Fro12g02295 185 PRINTS Thioredoxin family signature 149 160 - -
Fro12g02295 185 Gene3D Glutaredoxin 81 185 - -
Fro12g02295 185 ProSiteProfiles Thioredoxin domain profile. 72 185 IPR013766 -
Fro12g02295 185 PANTHER GEO12009P1 57 185 - GO:0005737(PANTHER)|GO:0015035(PANTHER)
Fro12g02295 185 SUPERFAMILY Thioredoxin-like 75 185 IPR036249 -
Fro12g02295 185 FunFam Thioredoxin 76 185 - -
Fro12g02295 185 CDD TRX-family 90 177 - -
Fro12g02295 185 ProSitePatterns Thioredoxin family active site. 102 120 IPR017937 -
Fro12g02295 185 NCBIfam thioredoxin 87 184 IPR005746 GO:0015035(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Fro12g02295 K03671 thioredoxin
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Event-related genes

Select Gene_1 Gene_2 Event_name
92706 Fro12g02295 Fro4g00522
92707 Fro12g02295 Fro7g00722
92708 Fro12g02295 Fro9g01322
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Fro Fro-Chr12:30278341 Fro12g02295 Fro-Chr12:30421742 dispersed
Fro Fro-Chr12:30421742 Fro2g01387 Fro-Chr2:17346770 dispersed
Fro Fro-Chr12:30421742 Fro7g00721 Fro-Chr7:8406108 wgd
Fro Fro-Chr12:30421742 Fro9g01322 Fro-Chr9:26047755 wgd