AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Fro12g02298 ATGACTGGAGTGCCATTGGATTTAAGAGCACAGAGTTATGGATCACCACAACAGTCACAAAACGGTTCGTTGCAGACTCAAAATGGGTTCACTGCACGCAAGCCTTCGAGGATGTCCCTCTCTGTTTCAAGGGAGAAAGATAAATTTCTTCCTTTTTTGTGTAGATATCTAAGTAGAAAGAAGATTGTAATGATGGTTTTAGCTACATTTGCACTCATGGCTTTCCTATCAGGGTTCTTTACGGCCAGTAGAGAAGATGCATCAGAGAGCTCGATCTTCAATCATTTTAGTGATGCTTATAATACCTCTTTTCAGTTCTCAAGAACGTTTCGTGGTCAGAAAGATGGTAATTCTAATATACAAGGAACTCTGTCGGTATGTGAAGAAAATCCTCCTACCCGGCATACTTTCAGTGCATCACATTCCACAGGATCTGTCCCTTCTCATAGCAATTTTTGTCAAAATTTTGCATTTCCACCCCCTCCTCCAGGTGATAGGAGACGGCCTGGACCTAGACCTTGTCCTGTGTGTTACCTTCCAGTGGAGGAAGCTATGGCTAGCATGCCGACTGCCACGTCAGGATCACCTGTTCTTCAACACTTAACTTATTTTCATGAGGAGACTTCTACTAAAACCGAACCACATGAAGGATCAGATTTTGGTGGGTATCCTTCCATAAGGCAAAGGAATGAATCTTTTGATATTAAAGAATCAATGACTGTACATTGTGGATTTGTAAAAGGTTGCAGACCTGGTTACAAAACTGGATTCGATATCGATGTATCTGATCTTGTGGAGTTGGAGCAATTTCATGATATTATTGTTGCATCAGCCATATTTGGAAACTATGATGTAATTCAGCAGCCGACTAAGATTAGTGAGGCTGCAAGTAAAAACATACCATTTTATATGTTTATTGATGAAGAAACTGAAGCATATATGAGAAATTCTAGCGCTTTGGACTATAGAATGAAGGTTGGATTATGGAGAATTATTGTTGTGCATAATGTTCCTTACACGGATTCTAGACGAAATGGAAAGGTCCCGAAGCTTTTACTACACAGACTCTTTCCAAATGTTCGGTATTCCATATGGATTGACGGAAAGCTGCAACTTGTTGTGGACCCATATCAACTTCTCGAAAGGTTTTTGTGGCGCCACAATGCTACTTTTGCGATTTCAAAACATTACAGGCGGTTTGATGTGTTTGAAGAAGCTGAAGCTAATAAAGCTGCAGGGAAATACGACAATGCATCCATTGATTACCAGATTAACTTTTACAAAAACGAGGGTCTAACACCTTATTCTAAGGCTAAGCTTCCTATAATCAGTGATGTTCCGGAAGGGTGTGTCATTATAAGAGAACATATTCCAATAACGAATCTCTTCACGTGTTTGTGGTTCAATGAAGTTGACCGGTTTACCTCAAGAGATCAGTTAAGTTTTGCTACTGTAAGAGACAAAATCATGGCTCAAGTCAACTGGAGTATTAATATGTTTATGGATTGTGAAAGAAGGAATTTTGTGATACAGGCATACCATAGAGATCTACTAGAGCACATGCCACCACCTGCTGCTAAAATGAGCAGTCCAAGACGGGCACGAGTTAATGTTCCTGTTACAGTTCCTATACCTGTGAGGGGTAATAATTCATCAGCCAAAAGTTCGGTTAAGAAAGCCGCTGTTAAACGAGGGAAAGGAGAGAGGAGATCTCGTTCTAGAAGGCATTCGAAGAATCCCGGTAATAGGGACAACACGTTCATTTGA 1767 40.46 MTGVPLDLRAQSYGSPQQSQNGSLQTQNGFTARKPSRMSLSVSREKDKFLPFLCRYLSRKKIVMMVLATFALMAFLSGFFTASREDASESSIFNHFSDAYNTSFQFSRTFRGQKDGNSNIQGTLSVCEENPPTRHTFSASHSTGSVPSHSNFCQNFAFPPPPPGDRRRPGPRPCPVCYLPVEEAMASMPTATSGSPVLQHLTYFHEETSTKTEPHEGSDFGGYPSIRQRNESFDIKESMTVHCGFVKGCRPGYKTGFDIDVSDLVELEQFHDIIVASAIFGNYDVIQQPTKISEAASKNIPFYMFIDEETEAYMRNSSALDYRMKVGLWRIIVVHNVPYTDSRRNGKVPKLLLHRLFPNVRYSIWIDGKLQLVVDPYQLLERFLWRHNATFAISKHYRRFDVFEEAEANKAAGKYDNASIDYQINFYKNEGLTPYSKAKLPIISDVPEGCVIIREHIPITNLFTCLWFNEVDRFTSRDQLSFATVRDKIMAQVNWSINMFMDCERRNFVIQAYHRDLLEHMPPPAAKMSSPRRARVNVPVTVPIPVRGNNSSAKSSVKKAAVKRGKGERRSRSRRHSKNPGNRDNTFI 588
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Fro12g02298 588 PANTHER ALKALINE CERAMIDASE-RELATED 36 552 IPR006852 -
Fro12g02298 588 MobiDBLite consensus disorder prediction 11 38 - -
Fro12g02298 588 Pfam TOD1-MUCI70, glycosyltransferase-like domain 201 514 IPR048354 -
Fro12g02298 588 MobiDBLite consensus disorder prediction 543 588 - -
Fro12g02298 588 MobiDBLite consensus disorder prediction 559 577 - -
Fro12g02298 588 MobiDBLite consensus disorder prediction 11 39 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Fro12g02298 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Fro Fro-Chr12:1128838 Fro12g02298 Fro-Chr12:30437701 dispersed
Fro Fro-Chr12:4340690 Fro12g02298 Fro-Chr12:30437701 dispersed
Fro Fro-Chr12:30437701 Fro13g00676 Fro-Chr13:8738698 dispersed
Fro Fro-Chr12:30262993 Fro12g02298 Fro-Chr12:30437701 wgd