AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Fro12g02312 ATGGCTACCAATTCAGTTGAGGTCGAAAATGTTGAAGAATCAAAAGTTCATGTCTTCTCATCGTCATCAGATTTGCTTGAGAAGTTGCATCAGAAGTGGAAATCAGTTGAGAAACTGCCATACCCTGCAATGTATTCCAGTGTTTATGGTGGGATTATTCTTGATCCTGCTATGATGGTCATCCCGATTGATGATCATATGGTGCATCGAGGCCACGGTGTGTTCGACACCGCTGTCATCCTTGATGGATACCTGTATGATCTCGAGGGTCATCTTGATCGAATCCTCATATCCGCATCGAAAGCCAAGCTCTCGCCTCCATTCCCAAGATCAACTCTTCGATCGATCCTTATCCAGCTGGCAGCCGTATCAAAATGCAAGAAAGGAACTTTAAGATATTGGTTAAGTGCAGGACCAGGGGATTTCTTGCTTACTCCTTCAGAGTCCACAACATCTGCTTTCTACGCAATCGTTCTTGATGAAGAATTCTCGCAGTGTAAAGAAGGCGTAAAGGTGATAACTTCCACAATCCCCATGAAAGTCCCTATGTTTGCTACAAGCAAGAATGTGAATTACCTCCCAAATGTACTGTCAAAGCTTGAAGCAGAAGAGAAAGGTGCATTTGCATCAATTTGGGTGGATGACGAAGGGTATGTCGCTGAGGGTCCGAATGTGAACGTTGGTTTTGTGAGCCGCGAAAAAGAGCTCATTTTGCCATATTTTGACAAGGTTTTAAGCGGGTGTACTGCGAACAGACTTCTTGAATTAGCTCCAAAGCTGATTGAAAATGGGAGTTTGAAGGGTGTGAGAACTGGGAATTTGACAGTTGAGGAAGCCAAACAAGCTGCTGAAATGATGTACATTGGTAGCACACTTCCTTTACTGCCAATTATTGAGTGGGATGAGAAGCCGATTGGCGATGGGAAAGTTGGGGAGTTGACAATGGCGCTATCGGATCTGATTTGGGAAGATATGGTGGCTGGTCCAGAGACACACAGGATAAAGGTTCCTTACGCGTAA 1020 44.51 MATNSVEVENVEESKVHVFSSSSDLLEKLHQKWKSVEKLPYPAMYSSVYGGIILDPAMMVIPIDDHMVHRGHGVFDTAVILDGYLYDLEGHLDRILISASKAKLSPPFPRSTLRSILIQLAAVSKCKKGTLRYWLSAGPGDFLLTPSESTTSAFYAIVLDEEFSQCKEGVKVITSTIPMKVPMFATSKNVNYLPNVLSKLEAEEKGAFASIWVDDEGYVAEGPNVNVGFVSREKELILPYFDKVLSGCTANRLLELAPKLIENGSLKGVRTGNLTVEEAKQAAEMMYIGSTLPLLPIIEWDEKPIGDGKVGELTMALSDLIWEDMVAGPETHRIKVPYA 339
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Fro12g02312 339 Gene3D - 161 330 IPR043132 -
Fro12g02312 339 SUPERFAMILY D-aminoacid aminotransferase-like PLP-dependent enzymes 49 326 IPR036038 GO:0003824(InterPro)
Fro12g02312 339 FunFam D-alanine aminotransferase 161 328 - -
Fro12g02312 339 PANTHER AMINO-ACID AMINOTRANSFERASE 33 330 IPR050571 GO:0019752(PANTHER)
Fro12g02312 339 Gene3D - 13 159 IPR043131 -
Fro12g02312 339 FunFam D-amino-acid transaminase, chloroplastic 21 159 - -
Fro12g02312 339 Pfam Amino-transferase class IV 73 300 IPR001544 GO:0003824(InterPro)
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Fro12g02312 K18482 4-amino-4-deoxychorismate lyase [EC:4.1.3.38]
leaf

Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Fro Fro-Chr12:30611076 Fro16g01198 Fro-Chr16:19467448 dispersed