AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Fro12g02361 ATGGCTTCTTCTTCCCATTTCATCTCTTTAATGCTATTTTTTCTCTCTTTTCAACTGTTTTCCACCATTTCTGAAGCTGTTGTGCCTGCTTCAGAAACCTTCACTTACGTTAACGAAGGCGATTTCGGCGATTACATTGTCGAATACGATGCCAATTATCGCGCTCTTCCCCCTTTCAGCAACCCATTCCAGCTCTGCTTCTACAACACAACCCCTAACGCATTCACTCTAGCCCTCCGCATGGGCACCGTTCGATCCGAATCCCTCATGCGCTGGGTCTGGGAAGCTAACCGTGCCAACCCCGTTCGCGAAAACGCCACCCTGTCCTTCCGGACGGACGGGAACCTGGTCCTCGCGGACGCCGACGGACGGGTCGTGTGGCAAACGAACACCGCCAACAAGGGTGTGGTTGGTTTTCAGGTGCTCCCCACCGGTAACATGGTTCTTCATGACGGTAATGGTAATTACTTATGGCAAAGCTTTGATTCACCAACTGACACTCTTTTAGTGGGTCAAACGCTTCGCGCCAGTGGTCCGAATAAGCTCGTGAGCCGGCTTTCGGAGGTGAGCAACGTCGACGGACCGTATAGTTTGGTGATGGAGCCGAAAGGGTTAGCCATGTATTACAAAAGCCCGCACTCGCCTCGACCAATGCTATACTGGTCGTCTCGCGAATGGTTCACCATTGACAGAGGTAGTTTGAGCAACCTAACGCTTACATCCGTCCCAGACACCGATGAGGGCTTTCTCTACTACTTGGCGTTCGAGTACTTCACCACAAACCCGATATCATCCTCGAACCGCAACATGGCGTATACGCGATACAACAACACGTTATCGTATCTTCGGTTAGGGATAGACGGGAACCTTAGGTTCTACACGTATAACCCGAATGTGCAAGGGGTGGCGTGGGAGTTGGTGTACACGTTTCTCGATCGGGATTCGATGGAAGGCGAGTGTCAGTTGCCGGGGCGATGTGGGAACTTTGGGTTGTGTGAGGATAGCCAGTGTGTCGCGTGCCCGACGCCGAATGGGCTAAGTGGCTGGAGCAAAGAGTGTGAGGTGAAAAAGGTGACATCTTGTAAAGCAAGTGACTTTTATTATCACAAGCTTGAAGGGGTTAATCATTTTATGATCAAGTACACGAGGGGCGACGCGACGAAACAAAACGATTGCGAGAGCAAATGCACGAGTGATTGTAAGTGCATGGGGTATTTCTATCACACCGATAGCTCGAGGTGTTGGATTGCTTACGATTTGAAGACGTTAACACGAGTTGGGAACTCAACTCATTTGGCGTACATCAAAACACCCAACAAGTAG 1323 50.42 MASSSHFISLMLFFLSFQLFSTISEAVVPASETFTYVNEGDFGDYIVEYDANYRALPPFSNPFQLCFYNTTPNAFTLALRMGTVRSESLMRWVWEANRANPVRENATLSFRTDGNLVLADADGRVVWQTNTANKGVVGFQVLPTGNMVLHDGNGNYLWQSFDSPTDTLLVGQTLRASGPNKLVSRLSEVSNVDGPYSLVMEPKGLAMYYKSPHSPRPMLYWSSREWFTIDRGSLSNLTLTSVPDTDEGFLYYLAFEYFTTNPISSSNRNMAYTRYNNTLSYLRLGIDGNLRFYTYNPNVQGVAWELVYTFLDRDSMEGECQLPGRCGNFGLCEDSQCVACPTPNGLSGWSKECEVKKVTSCKASDFYYHKLEGVNHFMIKYTRGDATKQNDCESKCTSDCKCMGYFYHTDSSRCWIAYDLKTLTRVGNSTHLAYIKTPNK 440
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Fro12g02361 440 SMART blect-4 47 164 IPR001480 -
Fro12g02361 440 Gene3D - 95 224 IPR036426 -
Fro12g02361 440 Pfam D-mannose binding lectin 93 177 IPR001480 -
Fro12g02361 440 CDD PAN-AP-plant 360 438 - -
Fro12g02361 440 Pfam S-locus glycoprotein domain 232 345 IPR000858 GO:0048544(InterPro)
Fro12g02361 440 ProSiteProfiles PAN-Apple domain profile. 361 438 IPR003609 -
Fro12g02361 440 CDD B-lectin 47 164 IPR001480 -
Fro12g02361 440 ProSiteProfiles Bulb-type lectin domain profile. 31 162 IPR001480 -
Fro12g02361 440 FunFam Os04g0303100 protein 83 216 - -
Fro12g02361 440 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE-THREONINE-PROTEIN KINASE SD2-5 56 438 IPR051343 -
Fro12g02361 440 PIRSF SLG 1 440 IPR035446 -
Fro12g02361 440 SUPERFAMILY alpha-D-mannose-specific plant lectins 72 211 IPR036426 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Fro12g02361 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Fro Fro-Chr12:31304900 Fro12g02381 Fro-Chr12:31545379 dispersed
Fro Fro-Chr12:31298246 Fro12g02361 Fro-Chr12:31304900 tandem
Fro Fro-Chr12:31304900 Fro12g02362 Fro-Chr12:31312249 tandem