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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Fro12g02392 ATGAGAGTGCATGTAGATTGCCCTGGATGCGAAAACAAGATCCGAAAAGCTCTTCAAAGACTCAAAGGAGTGGAGAACGTAGACATAGACATGGCTTTACAAAAGGTGACAGTCACTGGAATCGCAGACGAGAAGAAGGTGTTGAAGACGGTGAGAAAAACCGGCCGACGAGCCGAGATATGGAACATACCCTACAACCCCGATATTCGTACCCATAACTACAATGTTAATCAATATGCACAACAGCAGCAACTACAGCAACAACAAAATGGTGGTGCAGGCCCAGGCCCCACTGCGACATTCTACACCCGACAACCGTCTTCTGCATCATCGTATAACTACTACAAACACGGTTATGATGACCAGTATGTTTATAACCAGGTCCAGTCCTCGGGCTTGATCGGACACCAGACGGGCGCAGCTTTTAGCGATGAGAACACTCATGCCGCCTGTAATATTATGTAG 465 47.31 MRVHVDCPGCENKIRKALQRLKGVENVDIDMALQKVTVTGIADEKKVLKTVRKTGRRAEIWNIPYNPDIRTHNYNVNQYAQQQQLQQQQNGGAGPGPTATFYTRQPSSASSYNYYKHGYDDQYVYNQVQSSGLIGHQTGAAFSDENTHAACNIM 154
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Fro12g02392 154 ProSiteProfiles Heavy-metal-associated domain profile. 1 59 IPR006121 GO:0046872(InterPro)
Fro12g02392 154 SUPERFAMILY HMA, heavy metal-associated domain 3 62 IPR036163 GO:0046872(InterPro)
Fro12g02392 154 PANTHER COPPER TRANSPORT PROTEIN ATOX1-RELATED 1 154 IPR045181 GO:0046872(InterPro)
Fro12g02392 154 CDD HMA 6 59 IPR006121 GO:0046872(InterPro)
Fro12g02392 154 Gene3D - 1 60 - -
Fro12g02392 154 Pfam Heavy-metal-associated domain 3 56 IPR006121 GO:0046872(InterPro)
Fro12g02392 154 MobiDBLite consensus disorder prediction 82 101 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Fro12g02392 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Fro Fro-Chr12:31156167 Fro12g02392 Fro-Chr12:31692369 dispersed
Fro Fro-Chr12:31692369 Fro8g00838 Fro-Chr8:7023240 dispersed
Fro Fro-Chr12:31692369 Fro11g03009 Fro-Chr11:40623333 transposed