AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Fro12g02427 ATGAGTGGGGGTAGGGTTTCCATTCCGAACAATGTGAGGAAGACGATCCAGAACATCAAGGAGATCACGGGTAATCACAGTGAAGATGAGATATATGCAATGCTTAAAGATTGCTCTATGGATCCGAATGAGACCGCTCAGAAGCTTCTCTTGCAGGATCCGTTTCATGAAGTTAAGAGGAAGCGTGACCGCAAGAAAGAGAATCAGAATAAAGAACCTACAGAGTCCAGATGGAAACCTGGGATGCAGGGAAGGGGGAATAGGGGTGGAAGGTTGAACTACTCAACTCGTCGCACATATAATGATGTAGGTGGTAGCAAGCCATTACTTTCTGCAAAGGAAAATGGAATGAGTAAAGGTGCAGATGATGGTCCAAATCAGTCAATGCCTCAAGGTCAGAAGAATAAAGAGACAATTGTGGTTAAAAGCTCTTCTCGTGCTGTACCTGATAGAATTGCACATTCTTTTGTGGGGAGTGATGAGAAGAAATCTGAAGTGGTTCCTGCTGTCGAGGCAAGTAAGGACCCCACTGTTGGCGATAGTAGTGGGCCCCTTATCTCGAGTGCCAATGAGACATCAGCTTCTAAGACACCATCACCTTCACCAGGATTATATTTGCCAGAGAAAGACCCTATTCTGATGTCTTCACAAGATTCACGGGTCCCTGTTGGTACAATCAGACATGAAGTTGGGAGTCAACAAACTCCGATTGACGAAATTCACGAGACCCCCCTTGAGACTGTATCAACTGCATCTGGTTCTGAGGTTGGAAACTCCTCCATGCAAGGGAAGCCGCCATCTTCTCATGTCTCACTTTTTGCTTCCAGGCCTTCTTCAAACTATAACAATAAACCACAACAAGCAATCGGGCCTCAAAAAGTCGGTCCAAGTATGGAATGGAAACCAAAATCAACAAATCCGATTCCTGCGCAAGAGACTGAGTCACCTGAGCCAATTAAGGTGCATGTGGTTCAAGTTGAAAGTCAAACTCCAAACCTGTTTGCAGCCCATAATCTTGATGCAAAGGACATGATCCATGGGCTGGAGAAGAAGCTAGAACAATCACACATTTCAGGTGACCAACATGTCATTATTCCAAATCACCTCCATGTTCCTGAAGCTGAAAAACTCGGGTTCTACTTTGGGAGTTTTGATGCCAGTTTCAGTTTAAACATGACCTCCTCAAACAGGCCTGGGCCTGAGCCCATGAGTGACAAGAGTTCCGAGGCTTCTGAGGTGGTTGATGAAAGTATAGACGAGCAGCCCAGAAATCAGAATAATGCTTTGGCAAGTGCTGATGATGAAGACCCTCTTGATCATCCATCATCATCTAATAACATACCTGAGAATCTATCAGCCGAAGGTGACGTGCCATCAAATTCAGGCTTTAATCACCATGAATCTGAACAAGAGACTGCAGCAAGCCATCAACACCCAATTCTTCACACGGCTCCTAACTTAAGTTTTGGCTTTATTCCACCAATGATTGGGACCCACCCCACATCTTTTGAAACCAACGAGTCTCATAGTCATGATGGTTCACAAGTCCCAAACGTTGTAGTTCAGCAACCATTTGACCCAGCAAGCTATTTTGCTCAATTTTATCGTCCTGGTGCTGACGTGGATGGTCGCATGTCACCCTTTCATTCAACCGGGGTTCCAACCAAGTTTAATGGAAATATTCCTGTCTTATCTCCACAAGCTTCTCATTCTTCTCAAGAGGTTGTGAACTCACAAATGTTATCATCCGGTGCTGGTCCAACAGCAATACCTACCACACAAACTGGCGGGTTTATGCAAACCTCCATAGCCATGACTCAGCAACCGTTACCTGTTTTCAGGCAACCAACTGGGGTTCATTTACCACATTACCCTCCAAATTATATCCCATATGGACCATATTTCCCCCCATTTTATGTTCCTCCAGCAGCTATTCATCAATATTTGAGTAATAACACATTCCCACAACCTCCTCAAGCTGGTAGTATGTACCCGCCCCCACCAGTGGCTAGCTCAAAATACCCACTTCCACAATACAAAACGGGTGGTAATACAGGGAACCCTGCTAATATTGGAATGCCCGGAAGCTATGGACTGTACGGCTTAAACGCAGCTGGCTATAACTCTGGTTCAGTGGCTACAACTGGCAATTCAACTTCCGATGAAGACCTAGGTGGCTCCCAGTTTAAGGAAAGTAATGTCTACATTACTGGACAGCAGAGTGAAGGTTCAGGTGTATGGATGGCTGCACCGGGTCGAGACATATCAGGTATGCTGCAGGCTAATTCTTTCTATAACATTCCTCAAGGCGGCCAAGTTGCATATACGCCAACACAAGCCAGCCATGGGAATTTTGCCAGTCTTTATCACCACCCGGCTCAACCAGTAACCACCAGTGCGGTTCACCCACTTCTCCAACAGTCCCATGGACCCGGCGTTGACATGGCAGGACCCACACATCAAATCAACTGGCCTAATAACTACTAA 2487 45.76 MSGGRVSIPNNVRKTIQNIKEITGNHSEDEIYAMLKDCSMDPNETAQKLLLQDPFHEVKRKRDRKKENQNKEPTESRWKPGMQGRGNRGGRLNYSTRRTYNDVGGSKPLLSAKENGMSKGADDGPNQSMPQGQKNKETIVVKSSSRAVPDRIAHSFVGSDEKKSEVVPAVEASKDPTVGDSSGPLISSANETSASKTPSPSPGLYLPEKDPILMSSQDSRVPVGTIRHEVGSQQTPIDEIHETPLETVSTASGSEVGNSSMQGKPPSSHVSLFASRPSSNYNNKPQQAIGPQKVGPSMEWKPKSTNPIPAQETESPEPIKVHVVQVESQTPNLFAAHNLDAKDMIHGLEKKLEQSHISGDQHVIIPNHLHVPEAEKLGFYFGSFDASFSLNMTSSNRPGPEPMSDKSSEASEVVDESIDEQPRNQNNALASADDEDPLDHPSSSNNIPENLSAEGDVPSNSGFNHHESEQETAASHQHPILHTAPNLSFGFIPPMIGTHPTSFETNESHSHDGSQVPNVVVQQPFDPASYFAQFYRPGADVDGRMSPFHSTGVPTKFNGNIPVLSPQASHSSQEVVNSQMLSSGAGPTAIPTTQTGGFMQTSIAMTQQPLPVFRQPTGVHLPHYPPNYIPYGPYFPPFYVPPAAIHQYLSNNTFPQPPQAGSMYPPPPVASSKYPLPQYKTGGNTGNPANIGMPGSYGLYGLNAAGYNSGSVATTGNSTSDEDLGGSQFKESNVYITGQQSEGSGVWMAAPGRDISGMLQANSFYNIPQGGQVAYTPTQASHGNFASLYHHPAQPVTTSAVHPLLQQSHGPGVDMAGPTHQINWPNNY 828
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Fro12g02427 828 MobiDBLite consensus disorder prediction 180 200 - -
Fro12g02427 828 Pfam GBF-interacting protein 1 N-terminal 8 67 IPR009719 -
Fro12g02427 828 MobiDBLite consensus disorder prediction 248 290 - -
Fro12g02427 828 MobiDBLite consensus disorder prediction 45 210 - -
Fro12g02427 828 MobiDBLite consensus disorder prediction 53 74 - -
Fro12g02427 828 MobiDBLite consensus disorder prediction 248 315 - -
Fro12g02427 828 MobiDBLite consensus disorder prediction 441 476 - -
Fro12g02427 828 PANTHER FLOCCULATION PROTEIN (DUF1296) 1 828 IPR044277 GO:0051082(PANTHER)
Fro12g02427 828 SUPERFAMILY UBA-like 8 70 IPR009060 GO:0005515(InterPro)
Fro12g02427 828 MobiDBLite consensus disorder prediction 155 169 - -
Fro12g02427 828 MobiDBLite consensus disorder prediction 121 142 - -
Fro12g02427 828 MobiDBLite consensus disorder prediction 392 476 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Fro12g02427 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
92743 Fro12g02427 Fro9g01244
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Fro Fro-Chr12:3888631 Fro12g02427 Fro-Chr12:32100183 dispersed
Fro Fro-Chr11:393578 Fro12g02427 Fro-Chr12:32100183 transposed
Fro Fro-Chr11:26533931 Fro12g02427 Fro-Chr12:32100183 transposed
Fro Fro-Chr12:32100183 Fro9g01244 Fro-Chr9:25297039 wgd