AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Fro12g02439 ATGTGGGTGACTGTTTATCCTTCATTTGGTGATGCGGTTTACTCTATGCGTGGACCTAGGGCTAGTGCGGTTCACTTTGGGAAATGTGGGTTGCACCAGGGCCAAGTGGAAAACACTGTTTGCGTGGACAACGGTGTGGTGAATATCGACACTGAAGAGATTGACAAGGTTGTTAATATTAAACCCGAGTGGGGCGTGCATGTTATAAGCAATCAAGACGGGTATCAAGCTGGATTTAGAGGGTGGGGTGGATGGGGAGATAAAAGAGATCATCAATTGTGTTTGGACTTCGCTAACATGTACCATGTGACGAGCAAAACGTCTTGA 327 46.48 MWVTVYPSFGDAVYSMRGPRASAVHFGKCGLHQGQVENTVCVDNGVVNIDTEEIDKVVNIKPEWGVHVISNQDGYQAGFRGWGGWGDKRDHQLCLDFANMYHVTSKTS 108
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Fro12g02439 108 PANTHER BETA-1,2-N-ACETYLGLUCOSAMINYLTRANSFERASE II 1 103 IPR007754 GO:0000139(PANTHER)|GO:0005795(InterPro)|GO:0006487(PANTHER)|GO:0008455(InterPro)|GO:0008455(PANTHER)|GO:0009312(InterPro)|GO:0016020(InterPro)
Fro12g02439 108 Pfam N-acetylglucosaminyltransferase II (MGAT2) 13 94 IPR007754 GO:0005795(InterPro)|GO:0008455(InterPro)|GO:0009312(InterPro)|GO:0016020(InterPro)
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Fro12g02439 - -
leaf

Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Fro Fro-Chr12:32186478 Fro8g01062 Fro-Chr8:9277892 dispersed
Fro Fro-Chr12:32186478 Fro12g02497 Fro-Chr12:32721470 transposed