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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Fro12g02477 ATGAACAATTCCACCACCGAGTCAAATCCATTACCACCGAGTCTCAACGAGGTGGAGGCGATCATCGGCTACAAATTCAAAAACATGAAGCTTTTAAACGAAGCTTTTACTCATAACTCTTATAAAGACGACAATTGTCGATCATACGAGCGACTCGAGTACCTCGGTGACTCGGTTTTGAACCTTATGTTCGCCAAAGAACATTACTTCTCGTACCCGAAAATGAAGTCCGGTGAGTTGACTCAGTTGCGAACCGCCAATGTCGATACCGAAGCATTGGCTCGTGTTGCTTTTAAACATGGGTTACATAGGTTTCTCAAACACGACGATCCGTTGCTAAAAGATCGGGTGGAAGAACTTAAGGAAGGAATTAAAGAGTACCCTATGCACTCTCATGGTTTGATTAATTCTCCTAAAATACTTGCAGACATTGTTGAATCGGTCGTTGGTGCGGTTTATGTTGATAACGAGTTATCGATCGATGATACGTGGGAGGTTGTGAATAATTTGTTACAACCTTTGACGACACCAGAAAACCTTAGTTCAAACCCGGTGGTGAAGTTGAACGAGACGTGCCAAAAGATGGGGATCAAACTAGAATACAAAAACCTGTGGATCGAAACCGGAGATATCGAAATATATAAAGATAATGAGTTAATTGGCAAAGGAAACTACAAGAAAAAGAAAACGACCGCAAGGAACAAAGCAGCCGCCGATGCTTACGAGAATCTTGTCAAATTGTTGGATATGTGA 753 41.83 MNNSTTESNPLPPSLNEVEAIIGYKFKNMKLLNEAFTHNSYKDDNCRSYERLEYLGDSVLNLMFAKEHYFSYPKMKSGELTQLRTANVDTEALARVAFKHGLHRFLKHDDPLLKDRVEELKEGIKEYPMHSHGLINSPKILADIVESVVGAVYVDNELSIDDTWEVVNNLLQPLTTPENLSSNPVVKLNETCQKMGIKLEYKNLWIETGDIEIYKDNELIGKGNYKKKKTTARNKAAADAYENLVKLLDM 250
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Fro12g02477 250 CDD RIBOc 30 180 IPR000999 GO:0004525(InterPro)|GO:0006396(InterPro)
Fro12g02477 250 Pfam Ribonuclease III domain 50 156 IPR000999 GO:0004525(InterPro)|GO:0006396(InterPro)
Fro12g02477 250 ProSiteProfiles Ribonuclease III family domain profile. 15 157 IPR000999 GO:0004525(InterPro)|GO:0006396(InterPro)
Fro12g02477 250 Gene3D - 181 248 - -
Fro12g02477 250 SMART riboneu5 30 180 IPR000999 GO:0004525(InterPro)|GO:0006396(InterPro)
Fro12g02477 250 Pfam Double-stranded RNA binding motif 186 244 IPR014720 -
Fro12g02477 250 ProSitePatterns Ribonuclease III family signature. 50 58 IPR000999 GO:0004525(InterPro)|GO:0006396(InterPro)
Fro12g02477 250 SUPERFAMILY dsRNA-binding domain-like 139 244 - -
Fro12g02477 250 PANTHER DICER-RELATED 13 246 - GO:0003723(PANTHER)|GO:0004525(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0030422(PANTHER)
Fro12g02477 250 FunFam Endoribonuclease dicer-like 1 12 178 - -
Fro12g02477 250 Gene3D Ribonuclease III domain 10 180 IPR036389 GO:0004525(InterPro)|GO:0006396(InterPro)
Fro12g02477 250 SUPERFAMILY RNase III domain-like 14 175 IPR036389 GO:0004525(InterPro)|GO:0006396(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Fro12g02477 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Fro Fro-Chr12:32554735 Fro14g00015 Fro-Chr14:337943 dispersed
Fro Fro-Chr12:28098822 Fro12g02477 Fro-Chr12:32554735 transposed
Fro Fro-Chr3:18436177 Fro12g02477 Fro-Chr12:32554735 transposed
Fro Fro-Chr12:32542982 Fro12g02477 Fro-Chr12:32554735 wgd