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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Fro12g02525 ATGATACGAGCGGTGATAGTGATCAACGACCAAGGCAAGCCTCGCCTCGTCAAATTCTACGAATATCAGCCCGTGGAGAAACAGCAGGAAATCATTCACAACATATATGGAGTTCTATGCAGTCGAGCTGAGAATGTGAGCAACTTTGTTCAAGATTCAACTTTTGGTCCGAATACCCGACTTGTATACAAGACTTTTGCTACACTATACTTCATTTTCATATTTGATGATTCTGAAAACGAACTTGCTATACTAGATCTTATGCAAGTATTCGTGGAGACATTGGACAAGTGTTTCAGTAATGTGTGTGAGCTAGATATCGTGTTCAATTTCAACAAGGTACATACTATCCTTGATGAGATTATATTGGGTGGTCAAGTTGTCGAAATGAGTTCTTCTGAAGTTGTCAAAGCTGTAGACGAGATATCTCGGCTGGAGAAGAACCCAAATTCAATCGTTAGAGTTTCAAAATCCATATCTGGTTGGCAGGGATGA 495 40.0 MIRAVIVINDQGKPRLVKFYEYQPVEKQQEIIHNIYGVLCSRAENVSNFVQDSTFGPNTRLVYKTFATLYFIFIFDDSENELAILDLMQVFVETLDKCFSNVCELDIVFNFNKVHTILDEIILGGQVVEMSSSEVVKAVDEISRLEKNPNSIVRVSKSISGWQG 164
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Fro12g02525 164 ProSitePatterns Clathrin adaptor complexes small chain signature. 61 71 IPR000804 GO:0006886(InterPro)|GO:0016192(InterPro)|GO:0030117(InterPro)
Fro12g02525 164 SUPERFAMILY SNARE-like 1 141 IPR011012 -
Fro12g02525 164 Pfam Clathrin adaptor complex small chain 1 144 IPR022775 -
Fro12g02525 164 PANTHER ADAPTOR COMPLEXES SMALL SUBUNIT FAMILY 2 143 IPR016635 GO:0015031(InterPro)|GO:0016192(PANTHER)|GO:0043231(PANTHER)
Fro12g02525 164 PIRSF AP-complex-sigma 1 156 IPR016635 GO:0015031(InterPro)
Fro12g02525 164 Gene3D - 1 159 - -
Fro12g02525 164 FunFam AP complex subunit sigma 1 155 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Fro12g02525 K12399 AP-3 complex subunit sigma
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Fro Fro-Chr12:33001264 Fro8g01365 Fro-Chr8:13834962 dispersed
Fro Fro-Chr12:33001264 Fro16g01479 Fro-Chr16:24252678 transposed
Fro Fro-Chr12:33001264 Fro16g01562 Fro-Chr16:25533883 transposed