Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Fro12g02525 | ATGATACGAGCGGTGATAGTGATCAACGACCAAGGCAAGCCTCGCCTCGTCAAATTCTACGAATATCAGCCCGTGGAGAAACAGCAGGAAATCATTCACAACATATATGGAGTTCTATGCAGTCGAGCTGAGAATGTGAGCAACTTTGTTCAAGATTCAACTTTTGGTCCGAATACCCGACTTGTATACAAGACTTTTGCTACACTATACTTCATTTTCATATTTGATGATTCTGAAAACGAACTTGCTATACTAGATCTTATGCAAGTATTCGTGGAGACATTGGACAAGTGTTTCAGTAATGTGTGTGAGCTAGATATCGTGTTCAATTTCAACAAGGTACATACTATCCTTGATGAGATTATATTGGGTGGTCAAGTTGTCGAAATGAGTTCTTCTGAAGTTGTCAAAGCTGTAGACGAGATATCTCGGCTGGAGAAGAACCCAAATTCAATCGTTAGAGTTTCAAAATCCATATCTGGTTGGCAGGGATGA | 495 | 40.0 | MIRAVIVINDQGKPRLVKFYEYQPVEKQQEIIHNIYGVLCSRAENVSNFVQDSTFGPNTRLVYKTFATLYFIFIFDDSENELAILDLMQVFVETLDKCFSNVCELDIVFNFNKVHTILDEIILGGQVVEMSSSEVVKAVDEISRLEKNPNSIVRVSKSISGWQG | 164 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Fro12g02525 | 164 | ProSitePatterns | Clathrin adaptor complexes small chain signature. | 61 | 71 | IPR000804 | GO:0006886(InterPro)|GO:0016192(InterPro)|GO:0030117(InterPro) | |
| Fro12g02525 | 164 | SUPERFAMILY | SNARE-like | 1 | 141 | IPR011012 | - | |
| Fro12g02525 | 164 | Pfam | Clathrin adaptor complex small chain | 1 | 144 | IPR022775 | - | |
| Fro12g02525 | 164 | PANTHER | ADAPTOR COMPLEXES SMALL SUBUNIT FAMILY | 2 | 143 | IPR016635 | GO:0015031(InterPro)|GO:0016192(PANTHER)|GO:0043231(PANTHER) | |
| Fro12g02525 | 164 | PIRSF | AP-complex-sigma | 1 | 156 | IPR016635 | GO:0015031(InterPro) | |
| Fro12g02525 | 164 | Gene3D | - | 1 | 159 | - | - | |
| Fro12g02525 | 164 | FunFam | AP complex subunit sigma | 1 | 155 | - | - |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Fro12g02525 | K12399 | AP-3 complex subunit sigma |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Fro | Fro-Chr12:33001264 | Fro8g01365 | Fro-Chr8:13834962 | dispersed | |
| Fro | Fro-Chr12:33001264 | Fro16g01479 | Fro-Chr16:24252678 | transposed | |
| Fro | Fro-Chr12:33001264 | Fro16g01562 | Fro-Chr16:25533883 | transposed |