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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Fro12g02578 ATGGCTTCAAGTTTTCACTCAAAATACATATCAACCTCTCAAGAATATCCTCTTCATTTTCATGGAAGGTTTCGAATACACAAAGATGGCCGATGTGAAAGATTCATCGGAACCGATACCATCCCCGCCGGAACTGATCCCGCCACAGGCGTCCGATCAAAAGACGTCATCATCTCACACGAAACTAACGTCTTTGTAAGGATTTACGTCCCTAAAACCATCACCAGCGAACACAGACTCCCTACTCTGATTTACTATCACGGTGGTGGTTTTTTAACAGAATCCACCGCTTCTCCGACCTACCACCCAACACTTAACTTGATCACATCAGAGTCCAACGTGGTTATCGTGTCGGTGAACTACAGGCTGGCGCCCGAGTATCCTATACCTACACCTTACGAGGATTCTTGGGACGCGATCCAGTGGGTCGCGTCCCATGCAACCAGAAATGGTTGCGAGCCATGGTTAAACGACCATGCAGACCTTCATAATATGTTCTTTATTGGAGATAGTTCGGGTGCCAATATTGCCCACAACATGGCTATACGGGCCAGGTTGAGGCCGATTAAAGGTATTAACCTTAATGGGCTTATTCTACTCCACCCGTTTTTCTTAGGAAAAATCCAAAATGAACCCGTTTGTGACGAGTGGATGGAGTTGATGGAGATATTGTGGAAGTTGGTGAACCGACCTGGGATCGGGCAGGATGATCCGTTGATTAATCCGGGCGTTGACCCGCGTGTTTCGGGCTTGGGATGTAGAAGGATACTTGTTTGTGTTGGTGAGAAGGATAAGTTGAGGGCTTGGGGTGTTAACTACAAGAATGTGATGGAGAAGAGTGGATGGAAAGGAAAAGTGGAGTTGATGGAGAGTAAAGGGGAGGGGCATGTGTTCTTTTTGTCTAATACTTCTAGTGAAAATGCTTGTATGTTACGCAATAGGATTTGTACTTTTATTAACCAGATTCATAGTAGAGCTTGA 981 45.57 MASSFHSKYISTSQEYPLHFHGRFRIHKDGRCERFIGTDTIPAGTDPATGVRSKDVIISHETNVFVRIYVPKTITSEHRLPTLIYYHGGGFLTESTASPTYHPTLNLITSESNVVIVSVNYRLAPEYPIPTPYEDSWDAIQWVASHATRNGCEPWLNDHADLHNMFFIGDSSGANIAHNMAIRARLRPIKGINLNGLILLHPFFLGKIQNEPVCDEWMELMEILWKLVNRPGIGQDDPLINPGVDPRVSGLGCRRILVCVGEKDKLRAWGVNYKNVMEKSGWKGKVELMESKGEGHVFFLSNTSSENACMLRNRICTFINQIHSRA 326
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Fro12g02578 326 Pfam alpha-beta hydrolase fold 83 299 IPR013094 GO:0016787(InterPro)
Fro12g02578 326 SUPERFAMILY alpha-beta-Hydrolases 8 321 IPR029058 -
Fro12g02578 326 Gene3D alpha-beta hydrolase 11 321 IPR029058 -
Fro12g02578 326 PANTHER ARYLACETAMIDE DEACETYLASE 23 309 IPR050466 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Fro12g02578 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
92789 Fro12g02578 Fro4g00718
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Fro Fro-Chr12:33637943 Fro12g02581 Fro-Chr12:33656346 dispersed
Fro Fro-Chr12:33637943 Fro12g02580 Fro-Chr12:33651705 proximal
Fro Fro-Chr12:33637943 Fro17g01289 Fro-Chr17:21148322 wgd
Fro Fro-Chr12:33637943 Fro2g01566 Fro-Chr2:20131874 wgd
Fro Fro-Chr12:33637943 Fro4g00718 Fro-Chr4:7101372 wgd
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Fro1g00276 . 33 536 Carbohydrate Esterase gene family AT5G51490 52.559 0.0 555.0
Fro1g00615 . 381 460 Carbohydrate Esterase gene family AT3G27320 85.0 1.21e-47 155.0
Fro1g01094 ACH 69 140 Carbohydrate Esterase gene family AT3G14320 47.222 1.05e-19 79.7
Fro2g00248 . 93 606 Carbohydrate Esterase gene family AT4G33230 38.686 1.85e-122 372.0
Fro2g00333 WGDA 79 224 Carbohydrate Esterase gene family AT5G53370 29.487 3.77e-12 62.8
Fro2g00334 WGDA 39 224 Carbohydrate Esterase gene family AT5G53370 26.471 3.44e-10 57.0
Fro2g00335 WGDA 39 224 Carbohydrate Esterase gene family AT5G53370 26.368 3.22e-10 57.0
Fro2g00336 ACH 41 224 Carbohydrate Esterase gene family AT5G53370 25.126 1.81e-10 57.8
Fro2g00337 ACH,WGDA 62 220 Carbohydrate Esterase gene family AT1G53830 26.347 1.62e-09 55.1
Fro2g00338 ACH 41 225 Carbohydrate Esterase gene family AT5G53370 26.263 1.45e-11 61.2
Fro2g00340 . 7 511 Carbohydrate Esterase gene family AT2G45220 67.121 0.0 716.0
Fro2g00661 . 3 374 Carbohydrate Esterase gene family AT4G19410 51.579 9.30e-144 412.0
Fro2g00662 . 3 374 Carbohydrate Esterase gene family AT4G19410 50.263 1.94e-144 414.0
Fro2g00770 ACH,WGDA 59 235 Carbohydrate Esterase gene family AT1G53840 29.944 1.51e-15 72.0
Fro2g01274 . 9 543 Carbohydrate Esterase gene family AT3G05620 64.825 0.0 711.0
Fro2g01319 . 15 380 Carbohydrate Esterase gene family AT5G55590 60.218 1.23e-148 422.0
Fro2g01566 . 2 321 Carbohydrate Esterase gene family AT3G48690 49.062 1.60e-93 279.0
Fro3g00236 ACH,WGDA 59 219 Carbohydrate Esterase gene family AT3G14310 29.63 3.25e-19 83.2
Fro3g00237 . 35 554 Carbohydrate Esterase gene family AT1G23200 50.662 1.05e-175 504.0
Fro3g00665 . 6 361 Carbohydrate Esterase gene family AT1G69940 49.304 2.40e-131 379.0
Fro3g00706 ACH 59 216 Carbohydrate Esterase gene family AT3G14310 23.418 1.32e-14 69.7
Fro3g00707 . 59 216 Carbohydrate Esterase gene family AT3G14310 22.785 1.18e-13 67.0
Fro3g00708 . 52 216 Carbohydrate Esterase gene family AT3G14310 24.26 2.56e-16 74.7
Fro3g00762 . 1 597 Carbohydrate Esterase gene family AT3G49220 60.899 0.0 754.0
Fro3g01134 . 66 359 Carbohydrate Esterase gene family AT5G07430 40.816 2.62e-83 254.0
Fro3g01363 . 38 587 Carbohydrate Esterase gene family AT1G53830 59.818 0.0 672.0
Fro3g01458 . 39 118 Carbohydrate Esterase gene family AT3G16970 28.736 9.38e-08 47.0
Fro4g00039 . 61 357 Carbohydrate Esterase gene family AT5G47500 50.336 4.31e-105 312.0
Fro4g00384 . 54 592 Carbohydrate Esterase gene family AT3G14310 65.25 0.0 728.0
Fro4g00385 . 1 582 Carbohydrate Esterase gene family AT1G53840 58.12 0.0 689.0
Fro4g00620 . 42 118 Carbohydrate Esterase gene family AT3G16970 29.268 1.24e-06 43.5
Fro4g00718 ACH 1 329 Carbohydrate Esterase gene family AT3G48700 44.868 8.94e-89 267.0
Fro4g01487 . 363 592 Carbohydrate Esterase gene family AT3G14310 69.13 1.04e-115 341.0
Fro4g01488 . 56 357 Carbohydrate Esterase gene family AT1G53830 47.883 1.00e-79 251.0
Fro4g01489 . 365 592 Carbohydrate Esterase gene family AT3G14310 64.912 1.31e-107 320.0
Fro4g01490 . 61 358 Carbohydrate Esterase gene family AT1G53830 43.26 2.09e-72 233.0
Fro4g01491 . 56 592 Carbohydrate Esterase gene family AT3G14310 57.963 0.0 612.0
Fro5g00349 . 37 546 Carbohydrate Esterase gene family AT5G09760 59.82 0.0 664.0
Fro5g00555 . 1 342 Carbohydrate Esterase gene family AT5G16080 52.299 2.69e-111 325.0
Fro5g01244 . 10 581 Carbohydrate Esterase gene family AT1G53840 51.807 0.0 591.0
Fro5g01265 . 1 359 Carbohydrate Esterase gene family AT5G61570 50.4 1.69e-117 343.0
Fro5g01277 . 37 540 Carbohydrate Esterase gene family AT5G51500 54.941 0.0 570.0
Fro5g01278 ACH,WGDA 51 222 Carbohydrate Esterase gene family AT1G53830 29.73 3.16e-18 80.1
Fro5g01279 ACH 59 217 Carbohydrate Esterase gene family AT3G14310 23.899 2.35e-12 63.2
Fro5g01281 ACH,WGDA 51 221 Carbohydrate Esterase gene family AT1G53830 29.31 3.06e-19 83.2
Fro5g01283 . 11 511 Carbohydrate Esterase gene family AT2G45220 61.252 0.0 651.0
Fro5g01310 . 14 76 Carbohydrate Esterase gene family AT5G23870 55.072 1.95e-17 74.3
Fro5g01333 . 6 404 Carbohydrate Esterase gene family AT5G23870 62.408 0.0 534.0
Fro6g00068 . 39 334 Carbohydrate Esterase gene family AT2G19150 45.819 7.82e-89 269.0
Fro6g00335 WGDA 28 341 Carbohydrate Esterase gene family AT5G16080 30.581 5.05e-50 168.0
Fro6g00926 . 2 247 Carbohydrate Esterase gene family AT1G53840 36.981 4.62e-35 130.0
Fro7g00017 . 8 511 Carbohydrate Esterase gene family AT2G45220 64.854 0.0 681.0
Fro7g00018 . 173 511 Carbohydrate Esterase gene family AT2G45220 65.306 3.89e-163 464.0
Fro7g00020 . 8 511 Carbohydrate Esterase gene family AT2G45220 64.466 0.0 678.0
Fro7g00021 . 1 511 Carbohydrate Esterase gene family AT2G45220 59.768 0.0 637.0
Fro7g00022 ACH 56 220 Carbohydrate Esterase gene family AT1G53830 27.326 2.21e-12 63.5
Fro7g00033 ACH 57 326 Carbohydrate Esterase gene family AT5G16080 33.213 3.33e-44 152.0
Fro7g00329 WGDA 51 218 Carbohydrate Esterase gene family AT1G53830 31.176 5.32e-21 87.4
Fro7g00472 ACH,WGDA 9 389 Carbohydrate Esterase gene family AT4G19420 62.205 0.0 531.0
Fro7g00989 . 1 416 Carbohydrate Esterase gene family AT5G26670 66.825 0.0 601.0
Fro8g00468 . 1 446 Carbohydrate Esterase gene family AT5G14310 59.821 0.0 528.0
Fro8g00589 . 36 302 Carbohydrate Esterase gene family AT5G16080 36.823 1.48e-47 161.0
Fro8g00647 ACH 1 368 Carbohydrate Esterase gene family AT4G19420 53.209 1.66e-148 424.0
Fro8g00660 . 17 549 Carbohydrate Esterase gene family AT1G23200 41.436 8.21e-136 401.0
Fro8g00689 . 18 566 Carbohydrate Esterase gene family AT5G49180 45.208 0.0 523.0
Fro8g00947 ACH 45 213 Carbohydrate Esterase gene family AT3G14310 27.485 1.15e-16 75.9
Fro8g01133 . 59 362 Carbohydrate Esterase gene family AT5G47500 37.778 5.07e-70 220.0
Fro8g01185 ACH 31 418 Carbohydrate Esterase gene family AT3G02410 70.951 0.0 579.0
Fro8g01776 . 5 561 Carbohydrate Esterase gene family AT3G10710 54.401 0.0 625.0
Fro8g02011 . 479 695 Carbohydrate Esterase gene family AT5G36210 27.35 4.83e-18 87.0
Fro9g00610 . 2 321 Carbohydrate Esterase gene family AT3G48690 42.025 3.01e-79 243.0
Fro9g01092 ACH 3 325 Carbohydrate Esterase gene family AT3G48700 38.39 8.20e-78 239.0
Fro9g01598 . 9 378 Carbohydrate Esterase gene family AT4G19420 51.206 4.23e-146 418.0
Fro9g01599 . 9 375 Carbohydrate Esterase gene family AT4G19420 53.784 1.59e-150 429.0
Fro9g01673 WGDA 3 389 Carbohydrate Esterase gene family AT4G19420 63.496 0.0 558.0
Fro9g01674 WGDA 1 389 Carbohydrate Esterase gene family AT4G19420 59.744 0.0 519.0
Fro9g01898 ACH 50 213 Carbohydrate Esterase gene family AT3G14310 27.108 7.63e-18 79.3
Fro9g01899 . 53 213 Carbohydrate Esterase gene family AT3G14310 27.607 7.25e-19 82.0
Fro9g01900 WGDA 66 218 Carbohydrate Esterase gene family AT1G53830 30.719 6.67e-19 81.6
Fro9g02164 . 1 511 Carbohydrate Esterase gene family AT2G45220 62.405 0.0 655.0
Fro10g00623 . 27 137 Carbohydrate Esterase gene family AT3G16970 28.696 2.41e-08 48.5
Fro10g00854 . 23 329 Carbohydrate Esterase gene family AT1G68620 34.557 1.82e-59 192.0
Fro10g01068 . 4 329 Carbohydrate Esterase gene family AT1G68620 52.647 3.87e-122 353.0
Fro10g01108 WGDA 72 231 Carbohydrate Esterase gene family AT5G53370 33.14 1.36e-19 84.7
Fro11g00012 . 16 592 Carbohydrate Esterase gene family AT3G14310 66.216 0.0 765.0
Fro11g00063 . 38 296 Carbohydrate Esterase gene family AT5G09760 40.226 7.16e-42 149.0
Fro11g01122 . 59 362 Carbohydrate Esterase gene family AT5G47500 39.048 1.89e-72 226.0
Fro11g01245 . 1 446 Carbohydrate Esterase gene family AT5G14310 68.951 0.0 634.0
Fro11g01561 . 26 310 Carbohydrate Esterase gene family AT1G24793 58.246 1.41e-118 342.0
Fro11g01852 . 5 561 Carbohydrate Esterase gene family AT3G10710 55.752 0.0 638.0
Fro11g03157 . 61 360 Carbohydrate Esterase gene family AT5G61570 51.815 2.97e-100 296.0
Fro11g03165 . 9 360 Carbohydrate Esterase gene family AT5G61570 47.324 9.30e-103 305.0
Fro11g03216 . 29 324 Carbohydrate Esterase gene family AT5G16080 35.855 1.17e-55 182.0
Fro11g03267 . 29 324 Carbohydrate Esterase gene family AT5G16080 35.314 2.39e-55 182.0
Fro12g00159 . 20 511 Carbohydrate Esterase gene family AT2G45220 62.076 0.0 626.0
Fro12g00161 ACH,WGDA 41 225 Carbohydrate Esterase gene family AT5G53370 24.747 2.19e-08 51.6
Fro12g00163 ACH,WGDA 7 222 Carbohydrate Esterase gene family AT3G05620 25.446 3.77e-10 57.0
Fro12g00188 ACH 36 306 Carbohydrate Esterase gene family AT1G68620 33.681 1.13e-45 156.0
Fro12g00586 . 1 588 Carbohydrate Esterase gene family AT2G47030 39.546 2.24e-136 408.0
Fro12g00634 . 50 530 Carbohydrate Esterase gene family AT4G02300 53.512 0.0 531.0
Fro12g00908 ACH,WGDA 52 216 Carbohydrate Esterase gene family AT3G14310 30.303 2.05e-15 71.6
Fro12g00913 . 1 612 Carbohydrate Esterase gene family AT2G26450 46.055 0.0 548.0
Fro12g00959 . 6 284 Carbohydrate Esterase gene family AT2G41530 80.714 9.99e-177 487.0
Fro12g01798 . 4 416 Carbohydrate Esterase gene family AT5G26670 67.554 0.0 600.0
Fro12g01858 . 12 627 Carbohydrate Esterase gene family AT3G05610 44.564 0.0 585.0
Fro12g02578 ACH 3 315 Carbohydrate Esterase gene family AT1G19190 45.86 2.58e-91 273.0
Fro12g02580 . 12 333 Carbohydrate Esterase gene family AT3G48700 42.857 5.29e-86 261.0
Fro12g02581 . 1 325 Carbohydrate Esterase gene family AT3G48700 45.897 4.14e-89 268.0
Fro13g00152 ACH 59 218 Carbohydrate Esterase gene family AT3G14310 26.667 9.11e-17 77.0
Fro13g00214 WGDA 53 218 Carbohydrate Esterase gene family AT3G14310 27.168 1.74e-16 76.3
Fro13g01123 . 9 427 Carbohydrate Esterase gene family AT3G09410 60.714 0.0 546.0
Fro13g01366 . 1 341 Carbohydrate Esterase gene family AT3G63010 74.203 0.0 545.0
Fro13g01600 . 29 118 Carbohydrate Esterase gene family AT3G16970 28.125 2.42e-07 45.4
Fro13g01813 ACH 68 729 Carbohydrate Esterase gene family AT5G36210 72.222 0.0 1021.0
Fro13g01964 WGDA 59 357 Carbohydrate Esterase gene family AT5G47500 37.624 5.26e-74 231.0
Fro14g00008 WGDA 69 388 Carbohydrate Esterase gene family AT1G05310 38.125 4.90e-76 238.0
Fro14g00150 . 91 388 Carbohydrate Esterase gene family AT1G05310 57.718 1.99e-126 369.0
Fro14g00151 . 91 389 Carbohydrate Esterase gene family AT1G05310 50.502 3.60e-113 334.0
Fro14g01275 . 5 577 Carbohydrate Esterase gene family AT1G02810 59.652 0.0 693.0
Fro15g01126 . 38 546 Carbohydrate Esterase gene family AT5G09760 64.833 0.0 678.0
Fro15g01429 . 1 342 Carbohydrate Esterase gene family AT5G16080 51.714 4.91e-114 333.0
Fro15g01547 ACH 41 422 Carbohydrate Esterase gene family AT3G02410 71.54 0.0 565.0
Fro15g02338 . 1 359 Carbohydrate Esterase gene family AT5G61570 48.663 1.35e-110 325.0
Fro15g02356 ACH,WGDA 50 222 Carbohydrate Esterase gene family AT1G53830 27.168 5.95e-17 76.6
Fro15g02357 WGDA 59 217 Carbohydrate Esterase gene family AT3G14310 26.22 5.23e-13 65.1
Fro15g02358 . 50 216 Carbohydrate Esterase gene family AT3G14310 28.402 3.36e-19 82.8
Fro15g02361 . 4 511 Carbohydrate Esterase gene family AT2G45220 39.734 1.21e-124 373.0
Fro15g02436 . 34 597 Carbohydrate Esterase gene family AT3G49220 67.365 0.0 791.0
Fro16g01209 . 24 330 Carbohydrate Esterase gene family AT1G68620 39.365 3.19e-70 219.0
Fro16g01361 . 229 274 Carbohydrate Esterase gene family AT5G47500 84.783 5.80e-22 86.7
Fro16g01487 . 198 566 Carbohydrate Esterase gene family AT3G05610 52.033 3.41e-136 415.0
Fro16g01530 . 22 362 Carbohydrate Esterase gene family AT5G47500 74.78 0.0 535.0
Fro16g01693 . 29 118 Carbohydrate Esterase gene family AT3G16970 31.25 1.82e-08 48.5
Fro16g01864 . 29 118 Carbohydrate Esterase gene family AT3G16970 31.25 2.10e-08 48.5
Fro16g02070 . 69 389 Carbohydrate Esterase gene family AT1G05310 72.274 0.0 508.0
Fro16g02095 . 69 389 Carbohydrate Esterase gene family AT1G05310 72.274 0.0 510.0
Fro16g02298 ACH 60 729 Carbohydrate Esterase gene family AT5G36210 67.262 0.0 953.0
Fro16g02331 WGDA 23 255 Carbohydrate Esterase gene family AT1G68620 36.032 3.97e-50 168.0
Fro16g02428 . 23 255 Carbohydrate Esterase gene family AT1G68620 35.223 2.64e-48 163.0
Fro16g02450 WGDA 23 153 Carbohydrate Esterase gene family AT1G68620 35.878 3.97e-25 96.3
Fro17g00174 . 34 518 Carbohydrate Esterase gene family AT4G02320 51.318 0.0 520.0
Fro17g00175 . 8 571 Carbohydrate Esterase gene family AT4G02330 54.159 0.0 619.0
Fro17g00181 . 58 211 Carbohydrate Esterase gene family AT3G05610 29.375 5.81e-16 73.6
Fro17g00218 WGDA 1 343 Carbohydrate Esterase gene family AT3G63010 73.121 0.0 531.0
Fro17g01289 . 4 325 Carbohydrate Esterase gene family AT3G48700 44.444 7.10e-96 286.0
Fro18g00080 . 93 606 Carbohydrate Esterase gene family AT4G33230 37.961 1.12e-116 358.0
Fro18g00136 WGDA 1 343 Carbohydrate Esterase gene family AT3G63010 72.989 0.0 528.0
Fro18g01039 ACH 51 218 Carbohydrate Esterase gene family AT1G53830 31.953 1.67e-20 86.7
Fro18g01040 ACH 42 213 Carbohydrate Esterase gene family AT3G14310 30.636 1.88e-20 86.7
Fro18g01041 ACH 51 218 Carbohydrate Esterase gene family AT1G53830 31.953 1.96e-21 89.4
Fro18g01043 . 37 536 Carbohydrate Esterase gene family AT5G51490 51.881 0.0 519.0
Fro18g01058 . 1 359 Carbohydrate Esterase gene family AT5G61570 49.722 1.33e-110 325.0
Fro18g01152 . 42 118 Carbohydrate Esterase gene family AT3G16970 34.884 2.97e-07 45.4
Fro18g01586 ACH,WGDA 68 229 Carbohydrate Esterase gene family AT5G53370 28.736 1.32e-13 67.4
Fro18g01587 . 38 554 Carbohydrate Esterase gene family AT1G23200 52.581 0.0 532.0
Fro18g01674 . 1 476 Carbohydrate Esterase gene family AT1G26120 54.453 3.37e-178 507.0
Fro10000092.1g00007 . 38 587 Carbohydrate Esterase gene family AT1G53830 59.818 0.0 672.0
Fro10000077.1g00006 . 66 361 Carbohydrate Esterase gene family AT5G07430 40.878 2.13e-83 254.0
Fro10000374.1g00007 . 295 427 Carbohydrate Esterase gene family AT5G15860 62.406 8.26e-56 177.0
Fro10000102.1g00004 . 4 525 Carbohydrate Esterase gene family AT4G33220 57.934 0.0 638.0
Fro10000102.1g00005 . 135 547 Carbohydrate Esterase gene family AT2G26440 62.712 0.0 512.0
Fro10000103.1g00002 . 59 583 Carbohydrate Esterase gene family AT1G53830 40.987 7.88e-131 393.0
Fro10000183.1g00004 . 57 326 Carbohydrate Esterase gene family AT5G16080 33.213 2.97e-44 152.0