Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Fro12g02588 | ATGTCAGCCTTCCACGTCAGATTTCCGGCACCCAATTCACTCCCCAATTACCCCATCACCACCCGCAGACTCCAGGCATTAACTCCATCACAAACGACCGTATCAGCACCAGCAGAGGTCTCGGGAGATCGGCTGGAGCCGAGGGTTGAGAAGAGAAATGGATATTATGTGCTGAAGGAGAAGTTTAGAGAGGGTATTAATCCGCAGGAGAAGGTGAAGGTGGCGGGTGAACCGATGAAGTTGTTCATGGAGAATGGGATTGAAGAGCTTGCCAAGATTCCCATTGAAGAACTTGATAAGCTGAAGGAGAGTAAAGATGATGTTGATGTCAGACTCAAGTGGCTTGGCTTGTTTCATAGAAGGAAACATCAATATGGCCGGTTTATGATGAGGTTGAAGCTTCCAAATGGCGTAACAACTAGCGCGCAAACCCTATACTTAGCTAGTGTGATTAAACAATATGGTGAGCAAGGTTGTGCTGATATAACCACACGTCAAAACTGGCAAATTCGAGGTGTTACACTACCTGATGTGCCCGCGATTTTAAAGGGTCTTGATGAAGTCGGGCTAACAAGCATCCAAAGTGGTATGGACAATGTTAGAAACGCGGTTGGCAACCCGCTCGCAGGAATTGATCCGCATGAAATTGTGGACACGAGGCCGTATCTGAACTTATTATCACAGTTCATCACCGCAAATTCAAGAGGCAATCCCGAGTTTACCAACTTGCCGAGGAAGTGGAATGTGTGTGTGATTGGCTCACATGATCTTTATGAACACCCTCATATCAACGATCTAGCATACATGCCAGCTACTAAGAATGGTCGATTCGGGTTCAATTTGCTTGTTGGGGGCTTCTTTAGCGCGAAGCGGTGCGCAGACGCTATACCTCTTGACGCTTGGGTCCCAGAAGAAGATGTGGTCCCTGTTTGCGGGGCGATTCTCAAGGCTTTTCGTGATCTTGGTTCAAGAGGGAACAGGCAAAAGACTAGAATGATGTGGTTGATCGATGAACTCGGTATAGAAGGGTTTCGATCAGAAGTTGTAAAAAGAATGCCTGAACAAGCATTAGAGAGGGCTTCTTCAGAAGACCTTGTTGACCCAAAATGGGAAAGAAGGGATTATTTTGGTGTGCATCCACAAAAACAAGAAGGCTTGAGCTTTGTGGGCATTCACATTCCCGTGGGTCGGGTCCAAGCCGAAGACATGGAGCAATTGGCACGATTAGCCGACGAGTATGGCTCAGGGGAGCTTCGACTAACCGTAGAACAAAATATTATAATCCCAAACATACAAAACTCAAAAGTCGAAGCTTTGCTTGACGAACCACTATTAAAAGAAAAGTTTTTACCCGAGCCACCTATCTTGATGAAAGGTTTAGTGGCGTGTACGGGTAACCAATTTTGCGGGCAGGCGATAATCGAGACCAAAGCTCGTGCTTTGAAGGTCACAGAAGAAGTGGGGAGGCTTGTTTCCGTAACTCATCCAGTACGAATGCACTGGACGGGATGCCCGAACACGTGTGGGCAAGTGCAAGTGGCGGATATAGGTTTCATGGGAAGCATGGCTAAGGATGAAAATGGAAAGGTTGTTGAAGGGGTTGATGTTTTTTTGGGAGGTAGAATTGGAAGTGACTCACATTTAGGGGATGTTTATAAGAAGGGTGTCCCTTGTAAGGACTTGGTGCCCTTAGTAGTGGACATATTGGTTGAAAAGTTTGGTGCTGTTCGAAGAGATATAGAAGAGGGGGAAGAGTGA | 1758 | 46.47 | MSAFHVRFPAPNSLPNYPITTRRLQALTPSQTTVSAPAEVSGDRLEPRVEKRNGYYVLKEKFREGINPQEKVKVAGEPMKLFMENGIEELAKIPIEELDKLKESKDDVDVRLKWLGLFHRRKHQYGRFMMRLKLPNGVTTSAQTLYLASVIKQYGEQGCADITTRQNWQIRGVTLPDVPAILKGLDEVGLTSIQSGMDNVRNAVGNPLAGIDPHEIVDTRPYLNLLSQFITANSRGNPEFTNLPRKWNVCVIGSHDLYEHPHINDLAYMPATKNGRFGFNLLVGGFFSAKRCADAIPLDAWVPEEDVVPVCGAILKAFRDLGSRGNRQKTRMMWLIDELGIEGFRSEVVKRMPEQALERASSEDLVDPKWERRDYFGVHPQKQEGLSFVGIHIPVGRVQAEDMEQLARLADEYGSGELRLTVEQNIIIPNIQNSKVEALLDEPLLKEKFLPEPPILMKGLVACTGNQFCGQAIIETKARALKVTEEVGRLVSVTHPVRMHWTGCPNTCGQVQVADIGFMGSMAKDENGKVVEGVDVFLGGRIGSDSHLGDVYKKGVPCKDLVPLVVDILVEKFGAVRRDIEEGEE | 585 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Fro12g02588 | 585 | ProSitePatterns | Nitrite and sulfite reductases iron-sulfur-siroheme-binding site. | 502 | 518 | IPR006066 | GO:0016491(InterPro)|GO:0020037(InterPro)|GO:0051536(InterPro) | |
| Fro12g02588 | 585 | Pfam | Nitrite and sulphite reductase 4Fe-4S domain | 460 | 569 | IPR006067 | GO:0016491(InterPro)|GO:0020037(InterPro)|GO:0051536(InterPro) | |
| Fro12g02588 | 585 | Gene3D | - | 65 | 446 | - | - | |
| Fro12g02588 | 585 | SUPERFAMILY | Nitrite-Sulfite reductase N-terminal domain-like | 45 | 196 | IPR036136 | GO:0016491(InterPro) | |
| Fro12g02588 | 585 | SUPERFAMILY | Nitrite and sulphite reductase 4Fe-4S domain-like | 458 | 569 | IPR045854 | - | |
| Fro12g02588 | 585 | PANTHER | FERREDOXIN--NITRITE REDUCTASE, CHLOROPLASTIC | 28 | 582 | IPR051329 | - | |
| Fro12g02588 | 585 | Gene3D | Sulfite Reductase Hemoprotein, domain 1 | 454 | 584 | IPR045854 | - | |
| Fro12g02588 | 585 | PRINTS | Sirohaem Fe-binding site signature | 458 | 476 | IPR006066 | GO:0016491(InterPro)|GO:0020037(InterPro)|GO:0051536(InterPro) | |
| Fro12g02588 | 585 | PRINTS | Sirohaem Fe-binding site signature | 502 | 520 | IPR006066 | GO:0016491(InterPro)|GO:0020037(InterPro)|GO:0051536(InterPro) | |
| Fro12g02588 | 585 | Pfam | Nitrite-Sulfite reductase ferredoxin-like half domain | 379 | 443 | IPR005117 | GO:0016491(InterPro) | |
| Fro12g02588 | 585 | Pfam | Nitrite-Sulfite reductase ferredoxin-like half domain | 121 | 188 | IPR005117 | GO:0016491(InterPro) | |
| Fro12g02588 | 585 | Pfam | Nitrite and sulphite reductase 4Fe-4S domain | 197 | 354 | IPR006067 | GO:0016491(InterPro)|GO:0020037(InterPro)|GO:0051536(InterPro) | |
| Fro12g02588 | 585 | SUPERFAMILY | Nitrite-Sulfite reductase N-terminal domain-like | 333 | 469 | IPR036136 | GO:0016491(InterPro) | |
| Fro12g02588 | 585 | Gene3D | Sulfite Reductase Hemoprotein, domain 1 | 189 | 374 | IPR045854 | - | |
| Fro12g02588 | 585 | SUPERFAMILY | Nitrite and sulphite reductase 4Fe-4S domain-like | 197 | 354 | IPR045854 | - |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Fro12g02588 | K00366 | ferredoxin-nitrite reductase [EC:1.7.7.1] |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Fro | Fro-Chr12:33722191 | Fro2g01573 | Fro-Chr2:20220087 | wgd |