AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Fro12g02588 ATGTCAGCCTTCCACGTCAGATTTCCGGCACCCAATTCACTCCCCAATTACCCCATCACCACCCGCAGACTCCAGGCATTAACTCCATCACAAACGACCGTATCAGCACCAGCAGAGGTCTCGGGAGATCGGCTGGAGCCGAGGGTTGAGAAGAGAAATGGATATTATGTGCTGAAGGAGAAGTTTAGAGAGGGTATTAATCCGCAGGAGAAGGTGAAGGTGGCGGGTGAACCGATGAAGTTGTTCATGGAGAATGGGATTGAAGAGCTTGCCAAGATTCCCATTGAAGAACTTGATAAGCTGAAGGAGAGTAAAGATGATGTTGATGTCAGACTCAAGTGGCTTGGCTTGTTTCATAGAAGGAAACATCAATATGGCCGGTTTATGATGAGGTTGAAGCTTCCAAATGGCGTAACAACTAGCGCGCAAACCCTATACTTAGCTAGTGTGATTAAACAATATGGTGAGCAAGGTTGTGCTGATATAACCACACGTCAAAACTGGCAAATTCGAGGTGTTACACTACCTGATGTGCCCGCGATTTTAAAGGGTCTTGATGAAGTCGGGCTAACAAGCATCCAAAGTGGTATGGACAATGTTAGAAACGCGGTTGGCAACCCGCTCGCAGGAATTGATCCGCATGAAATTGTGGACACGAGGCCGTATCTGAACTTATTATCACAGTTCATCACCGCAAATTCAAGAGGCAATCCCGAGTTTACCAACTTGCCGAGGAAGTGGAATGTGTGTGTGATTGGCTCACATGATCTTTATGAACACCCTCATATCAACGATCTAGCATACATGCCAGCTACTAAGAATGGTCGATTCGGGTTCAATTTGCTTGTTGGGGGCTTCTTTAGCGCGAAGCGGTGCGCAGACGCTATACCTCTTGACGCTTGGGTCCCAGAAGAAGATGTGGTCCCTGTTTGCGGGGCGATTCTCAAGGCTTTTCGTGATCTTGGTTCAAGAGGGAACAGGCAAAAGACTAGAATGATGTGGTTGATCGATGAACTCGGTATAGAAGGGTTTCGATCAGAAGTTGTAAAAAGAATGCCTGAACAAGCATTAGAGAGGGCTTCTTCAGAAGACCTTGTTGACCCAAAATGGGAAAGAAGGGATTATTTTGGTGTGCATCCACAAAAACAAGAAGGCTTGAGCTTTGTGGGCATTCACATTCCCGTGGGTCGGGTCCAAGCCGAAGACATGGAGCAATTGGCACGATTAGCCGACGAGTATGGCTCAGGGGAGCTTCGACTAACCGTAGAACAAAATATTATAATCCCAAACATACAAAACTCAAAAGTCGAAGCTTTGCTTGACGAACCACTATTAAAAGAAAAGTTTTTACCCGAGCCACCTATCTTGATGAAAGGTTTAGTGGCGTGTACGGGTAACCAATTTTGCGGGCAGGCGATAATCGAGACCAAAGCTCGTGCTTTGAAGGTCACAGAAGAAGTGGGGAGGCTTGTTTCCGTAACTCATCCAGTACGAATGCACTGGACGGGATGCCCGAACACGTGTGGGCAAGTGCAAGTGGCGGATATAGGTTTCATGGGAAGCATGGCTAAGGATGAAAATGGAAAGGTTGTTGAAGGGGTTGATGTTTTTTTGGGAGGTAGAATTGGAAGTGACTCACATTTAGGGGATGTTTATAAGAAGGGTGTCCCTTGTAAGGACTTGGTGCCCTTAGTAGTGGACATATTGGTTGAAAAGTTTGGTGCTGTTCGAAGAGATATAGAAGAGGGGGAAGAGTGA 1758 46.47 MSAFHVRFPAPNSLPNYPITTRRLQALTPSQTTVSAPAEVSGDRLEPRVEKRNGYYVLKEKFREGINPQEKVKVAGEPMKLFMENGIEELAKIPIEELDKLKESKDDVDVRLKWLGLFHRRKHQYGRFMMRLKLPNGVTTSAQTLYLASVIKQYGEQGCADITTRQNWQIRGVTLPDVPAILKGLDEVGLTSIQSGMDNVRNAVGNPLAGIDPHEIVDTRPYLNLLSQFITANSRGNPEFTNLPRKWNVCVIGSHDLYEHPHINDLAYMPATKNGRFGFNLLVGGFFSAKRCADAIPLDAWVPEEDVVPVCGAILKAFRDLGSRGNRQKTRMMWLIDELGIEGFRSEVVKRMPEQALERASSEDLVDPKWERRDYFGVHPQKQEGLSFVGIHIPVGRVQAEDMEQLARLADEYGSGELRLTVEQNIIIPNIQNSKVEALLDEPLLKEKFLPEPPILMKGLVACTGNQFCGQAIIETKARALKVTEEVGRLVSVTHPVRMHWTGCPNTCGQVQVADIGFMGSMAKDENGKVVEGVDVFLGGRIGSDSHLGDVYKKGVPCKDLVPLVVDILVEKFGAVRRDIEEGEE 585
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Fro12g02588 585 ProSitePatterns Nitrite and sulfite reductases iron-sulfur-siroheme-binding site. 502 518 IPR006066 GO:0016491(InterPro)|GO:0020037(InterPro)|GO:0051536(InterPro)
Fro12g02588 585 Pfam Nitrite and sulphite reductase 4Fe-4S domain 460 569 IPR006067 GO:0016491(InterPro)|GO:0020037(InterPro)|GO:0051536(InterPro)
Fro12g02588 585 Gene3D - 65 446 - -
Fro12g02588 585 SUPERFAMILY Nitrite-Sulfite reductase N-terminal domain-like 45 196 IPR036136 GO:0016491(InterPro)
Fro12g02588 585 SUPERFAMILY Nitrite and sulphite reductase 4Fe-4S domain-like 458 569 IPR045854 -
Fro12g02588 585 PANTHER FERREDOXIN--NITRITE REDUCTASE, CHLOROPLASTIC 28 582 IPR051329 -
Fro12g02588 585 Gene3D Sulfite Reductase Hemoprotein, domain 1 454 584 IPR045854 -
Fro12g02588 585 PRINTS Sirohaem Fe-binding site signature 458 476 IPR006066 GO:0016491(InterPro)|GO:0020037(InterPro)|GO:0051536(InterPro)
Fro12g02588 585 PRINTS Sirohaem Fe-binding site signature 502 520 IPR006066 GO:0016491(InterPro)|GO:0020037(InterPro)|GO:0051536(InterPro)
Fro12g02588 585 Pfam Nitrite-Sulfite reductase ferredoxin-like half domain 379 443 IPR005117 GO:0016491(InterPro)
Fro12g02588 585 Pfam Nitrite-Sulfite reductase ferredoxin-like half domain 121 188 IPR005117 GO:0016491(InterPro)
Fro12g02588 585 Pfam Nitrite and sulphite reductase 4Fe-4S domain 197 354 IPR006067 GO:0016491(InterPro)|GO:0020037(InterPro)|GO:0051536(InterPro)
Fro12g02588 585 SUPERFAMILY Nitrite-Sulfite reductase N-terminal domain-like 333 469 IPR036136 GO:0016491(InterPro)
Fro12g02588 585 Gene3D Sulfite Reductase Hemoprotein, domain 1 189 374 IPR045854 -
Fro12g02588 585 SUPERFAMILY Nitrite and sulphite reductase 4Fe-4S domain-like 197 354 IPR045854 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Fro12g02588 K00366 ferredoxin-nitrite reductase [EC:1.7.7.1]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Fro Fro-Chr12:33722191 Fro2g01573 Fro-Chr2:20220087 wgd