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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Fro12g02593 ATGGCTAGCACAAGTGCGTCAGCGTTGATATTTTCTTCAGGGTCCATGGAACAAACACAATTGTCTATCCAAAGCACGAACTCACCTCAGCAAAATCGAAATGGGTCTGATGGTCCGATTGCCATACTTTGGGACATGGAAAATTGTCCCATTCCTAGTGACATACGGCCGGAGGACGTGGCAGGTAATATCCGAATGGCCTTACGTGTGCACCCCATAGTCAACGGTGTTGTAACAATGTTTTCTGCTTATGGGATTTCAATGGGTTTCCTAGACGTCTTAGGGAGGGATGCCAGAGGACGGTGTGAAGCTCATAGATGTGCCTAA 327 47.4 MASTSASALIFSSGSMEQTQLSIQSTNSPQQNRNGSDGPIAILWDMENCPIPSDIRPEDVAGNIRMALRVHPIVNGVVTMFSAYGISMGFLDVLGRDARGRCEAHRCA 108
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Fro12g02593 108 MobiDBLite consensus disorder prediction 1 37 - -
Fro12g02593 108 MobiDBLite consensus disorder prediction 1 39 - -
Fro12g02593 108 PANTHER LIMKAIN B LKAP 25 87 IPR024768 GO:0005777(InterPro)|GO:0010468(InterPro)
Fro12g02593 108 Pfam NYN domain 40 88 IPR021139 GO:0004540(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Fro12g02593 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
92796 Fro12g02593 Fro3g01083
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Fro Fro-Chr12:33765594 Fro3g01097 Fro-Chr3:17057206 transposed
Fro Fro-Chr12:33765594 Fro3g01083 Fro-Chr3:16878234 transposed