AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Fro12g02595 ATGGCGAAAATCAAATGCGGATGCAATGTGTTCTTCGCCACAGTTGTGCTGTTCGCGTACAAATTTGTGCTGTTCGCGTATGCTTCATCGCTCAAGGAAGGACAAACGTGCGTGGATAATAGCAACTGTGACGCAGGTTTACATTGTGAGGCTTGTGTTGCAGACGGCAATGTTCGTCCTAGATGTACTCGCCTTCAACCTATCAGTCCCTTTTCTAAGGTGAAAGGATTGCCGTTTAATCGGTACTCGTGGTTAACGACGCATAATTCGTTCGCTAAATTTGGAGAGAAGTCGGCTACCGGTTCCGTCGTTCTAGCTCCGACGAACCAGCAGGACTCTGTTAGTTCGCAGCTCGATAACGGTGTGAGAGGGCTGATGCTTGATATGTATGACTTTGAGAATGACATTTGGTTATGCCATTCATTTGGTGGCAAATGCTTCAACTACACAGCTTTTCAACCTGCTATCAATGTTCTGAAAGAGATTCGATTTTTCCTAGAAAAGAATCCAACTGAAATCGTAACCCTAATCATTGAAGATTATGTTACCTCACCAAAGGGTCTAACTAATGTCTTCAATGCTGCTGGTCTGAGGAAATACTGGTTTCCAGCAGCCCAAATGCCGAGTGATGGTAGGGACTGGCCTACAGTTGACTCAATGGTTCGCCAGAATTACCGTTTGGTAGTTTTCACTTCCAAATCTTCTAAACAGGCTACTGAAGGGATTGCCTATGAGTGGAAGTACTTGGTTGAAAACCAATATGGAACAGATGGGATGAAAAGCGGTTTATGCCCGAACCGTGCTGAATCAGCTGCAATGAACACTACATCAAGATCACTTGTTTTAATGAACTATTTCCCAGATACACCTGATATTACCCAAGCTTGCAAGCACAATTCAGGCCCATTAATCAGCATGATGAACACATGCCATGATGTCGCTGGTAAACGGTGGCCTAATTTCATTGCTGTTGACTTTTACAAGAGGAGTGATGGTGGGGGTGCACCAGCAGCTGTAGATATGGCTAACGGTCAGCTGGTTTGTGGTTGTAACACCATTGCAGCATGCAGGCCAAACATGACCTTTGGAGCTTGTAACCTGCCAGAGGCTGGGGCTGCTCCAACTCCAATTTCAGCATTAAAAACCTCGGGGAACATCGGTGGTCGACCGGGTCATCTTGGATGGTTGTTTGGGTCAGGTTTGATTGTTATAACCTTGTGTTTTTAA 1227 45.23 MAKIKCGCNVFFATVVLFAYKFVLFAYASSLKEGQTCVDNSNCDAGLHCEACVADGNVRPRCTRLQPISPFSKVKGLPFNRYSWLTTHNSFAKFGEKSATGSVVLAPTNQQDSVSSQLDNGVRGLMLDMYDFENDIWLCHSFGGKCFNYTAFQPAINVLKEIRFFLEKNPTEIVTLIIEDYVTSPKGLTNVFNAAGLRKYWFPAAQMPSDGRDWPTVDSMVRQNYRLVVFTSKSSKQATEGIAYEWKYLVENQYGTDGMKSGLCPNRAESAAMNTTSRSLVLMNYFPDTPDITQACKHNSGPLISMMNTCHDVAGKRWPNFIAVDFYKRSDGGGAPAAVDMANGQLVCGCNTIAACRPNMTFGACNLPEAGAAPTPISALKTSGNIGGRPGHLGWLFGSGLIVITLCF 408
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Fro12g02595 408 PANTHER UNCHARACTERIZED 41 356 IPR051057 GO:0008081(PANTHER)
Fro12g02595 408 SUPERFAMILY PLC-like phosphodiesterases 76 347 IPR017946 GO:0006629(InterPro)|GO:0008081(InterPro)
Fro12g02595 408 CDD PI-PLCc-At5g67130-like 69 343 - -
Fro12g02595 408 ProSiteProfiles Phosphatidylinositol-specific phospholipase X-box domain profile. 78 186 - -
Fro12g02595 408 Gene3D Phosphatidylinositol (PI) phosphodiesterase 69 333 IPR017946 GO:0006629(InterPro)|GO:0008081(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Fro12g02595 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
92797 Fro12g02595 Fro4g00730
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Fro Fro-Chr11:9373801 Fro12g02595 Fro-Chr12:33779938 dispersed
Fro Fro-Chr12:33779938 Fro5g00633 Fro-Chr5:13030858 dispersed
Fro Fro-Chr11:8216783 Fro12g02595 Fro-Chr12:33779938 wgd
Fro Fro-Chr12:33779938 Fro4g00730 Fro-Chr4:7248681 wgd