AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Fro12g02600 ATGGAGATCGCACCGGCACACGACGGAGCCGGAACCCTACCGGAATCTTCATCTGCTTCCACCGTCTCCGTCGATAACAGCAATTTGTCGACCAACATGTACGATGACGATAATGAAGAGGATGAGGATGTTTGCCGGATCTGCCGGAATCCAGGAGACGCCGATAATCCTCTCCGGTATCCGTGTGCTTGTAGCGGCAGTATTAAGTTCGTTCACCAAGACTGTCTTCTTCAGTGGCTCAATCACAGCAACGCTCGTCACTGCGAGGTATGCAAGCACCCCTTTTCATTCTCCCCTGTATATGCTGAAAACGCCCCTGGAAGGCTTCCTTTTCAGGAATTTATCATTGGGATAGCAATTAAAGCTTATATTGTGATGCAGTTCTTCATACGTTTCATTTTTGTGCTATCCATATGGCTTTTAATCATACCGTTTATCACTTTCTGGATATGGCGATTTTCATTTGTTAGGAGTTTTAAGGAAGCCCAGAGACTTTTCTTAAGCCATATTTCAACTACTCTCATCCTCACAGATTGTCTTCATGGGTTCCTACTCTCAGCAAGCATTGTCTTTATTTTTCTTGGTGCCACATCTTTGAGGGACTATTTTCGACATTTAAGAGAACTTGGAGGGCAGGAAGGTGACAGAGAGGAAGAACTAGATAGAAACGGTGTTCATGTTGCAAGGAGACAAGGTAACCGGAACCTTGTTGGTGAAGGGAATGGTGAAGATGTTGGTGGGGCCCATGGTATTGGTGGGGCTGGTCAGATGATTAGAAGGAATGCAGAAAATGTTGCAGCCAGGTGGGAGATGCAAGCGGCTCGACTTGAGGCACATGTGGAACAGATATTTGATGGTTTAGATGATGGTGATGGTGATGGTGCAGAGGATGTTCCTTTTGATGAACTGGTTGGTATGCAGGGGCCCATTTTTCATTTGGTGGAAAATGCATTTACTGTTCTTGCAAGCAACATGATATTTCTTGGTGTTGTAGTGCTTGTGCCTTTTCACCTAGGACGTTTTGTCCTCCATCAGTTATCATTTATTTTATCATCTGCCACGAGCCCAATGTTTTCAACCGTTGTACCCATTACGCAACAAGCACTTTCATTAGCCAATATTACATTAAAAAACACACTTTCTGCAGCCACAAATTTTACAACTGACAAAAATCCAGATGTAAATGATACAGCTCTTGTTTCAGTTAATATTTTAAGAGGAGATTCCCGACTATCTGATGCTGCAACTCTTGCAGTTGGATATATATCCATTTTCACGATGGTTATTCTCTATTTAGGATTTATAGCACTTGTTAGGTATGCCAGGGGTGAGCCCTTGACCATGGGGAGGTTTTATGGTATTACTTCAATTGCAGAAACAATCCCATCCCTTTTTAGACAGTTTTTAGCTGCAATGAGACATTTAATGACTATGATAAAGGTTGCTTTCCTATTGGTCATTGAACTAGGGGTGTTCCCTCTAATGTGTGGATGGTGGTTAGATGTTTGTACTATAAGGATGTTTGGGAAGTCAATCAGTCAAAGAATTGACTTCTTTTCGGTTTCTCCGCTTGCAAGCTCATTGATTCATTGGGCTGTAGGGATTGTCTACATGTTGCAAATATCCATCTTTGTTAGTCTTCTTCGAGGGGTTTTGCGGAGGGGAGTCCTTTATTTTCTGCGGGATCCAGCTGATCCTAATTACAATCCATTTAGGGATTTAATTGATGATCCTGTGTATAAGCATGCTCGCAGGGTTCTCTTGTCAGTTGCTGTTTATGGGAGTTTAATTGTAATGCTGGTATATTTGCCTGTTAAACTTGCTATGCGAATGGCTCCTTCTATCTTCCCTCTTGATATATCAGTATCTGACCCATTCACCGAGATTCCTGCTGATATGCTTCTCTTCCAAATTTGCATCCCATTTGCTGTTGAGCATTTTAAGCTGCGGGCAACAATAAAGGCACTTCTGTACTATTGGTTTACTGCAGTTGGGTGGGTCCTCGGTTTAACGGATTACTTATTGCCCAGACCTGAAGACATTGGTGGACAAGAAAATGAGAATGATCCAGCAAGAGGGGATAGGATGCATGGTCAAGTAGGTGGTCAACCTGGGGGTCAACATCAAGCTGTAGCCGGATATTTACTGCCGAATGATTTGAACCGAGCTAGTTCTGCAGAAGAAGACGATGGTGATGAGCAATCTGATTCAGAGAGGTATATGTTTGTTCTGTGTATTGTGCTGCTTTTATTGGTGGCTTGGATGACATTGCTGATCTTCAATTCTGCTTTAATTGTGGTGCCTGTATCCCTTGGACGAGTGTTATTCAATGCAGTTCCCCTTCTCCCTATCACACATGGCATTAAATGCAATGACATATATTCGTTTGTTATTGGAAGTTATGTCATCTGGATGACACTGGCGGGCATACGGTATTGCATTAATCAAATTAGAACAAGGAGAGCTACTGTGTTACTAGGTCAAATTTGGATATGGTGTTCCATTGTTGTCAAGAGTTCAGTCCTGTTGTCAATTTGGATTTTTGTCATCCCAGTGTTGATAGGTCTGCTATTTGAACTTCTGGTTATTGTACCAATGAGGGTGCCTGTGGATGAAAGCCCAGTGTTTCTGTTATATCAGGATTGGGCTCTTGGACTTGTTTTTCTTAAGATATGGACACGATTGGTAATGTTGGATCATGTGATGCCTCTTATGGATGACAGCTGGCGAGTGAAATTCGAGAGAGTAAGGGAAGACGGTTTCTCAAGGTTACAAGCCTTTTGGGTCCTACAAGAGATCGTGATCCCCATCATTATTAAACTCCTTACGGCTCTCTGTGTCCCATATGTGCTAGCCCGTGGAGTGTTTCCTGTATTTGGGTACCCGTTAGTGGTTAACTCTGCCGTCTACAGATTCGCATGGCTAGGGTGCCTTGGTATGAGTTTGTTGTGTTTTTGTGCCAAACGGTTCCATGTGTGGTTCACCAACCTCCACAACTCGATTAGAGATGACCGATATTTGATTGGTCGAAGGCTTCATAACTATGGGGAAGATGATGCACAACATGAGGGTGAGACTGCAAATGTGCCTGACCCACAGGACACTGCCGTCGGCTTGAGGCATAGACGCAATATTCCAGCTGTGGGTTAA 3150 43.3 MEIAPAHDGAGTLPESSSASTVSVDNSNLSTNMYDDDNEEDEDVCRICRNPGDADNPLRYPCACSGSIKFVHQDCLLQWLNHSNARHCEVCKHPFSFSPVYAENAPGRLPFQEFIIGIAIKAYIVMQFFIRFIFVLSIWLLIIPFITFWIWRFSFVRSFKEAQRLFLSHISTTLILTDCLHGFLLSASIVFIFLGATSLRDYFRHLRELGGQEGDREEELDRNGVHVARRQGNRNLVGEGNGEDVGGAHGIGGAGQMIRRNAENVAARWEMQAARLEAHVEQIFDGLDDGDGDGAEDVPFDELVGMQGPIFHLVENAFTVLASNMIFLGVVVLVPFHLGRFVLHQLSFILSSATSPMFSTVVPITQQALSLANITLKNTLSAATNFTTDKNPDVNDTALVSVNILRGDSRLSDAATLAVGYISIFTMVILYLGFIALVRYARGEPLTMGRFYGITSIAETIPSLFRQFLAAMRHLMTMIKVAFLLVIELGVFPLMCGWWLDVCTIRMFGKSISQRIDFFSVSPLASSLIHWAVGIVYMLQISIFVSLLRGVLRRGVLYFLRDPADPNYNPFRDLIDDPVYKHARRVLLSVAVYGSLIVMLVYLPVKLAMRMAPSIFPLDISVSDPFTEIPADMLLFQICIPFAVEHFKLRATIKALLYYWFTAVGWVLGLTDYLLPRPEDIGGQENENDPARGDRMHGQVGGQPGGQHQAVAGYLLPNDLNRASSAEEDDGDEQSDSERYMFVLCIVLLLLVAWMTLLIFNSALIVVPVSLGRVLFNAVPLLPITHGIKCNDIYSFVIGSYVIWMTLAGIRYCINQIRTRRATVLLGQIWIWCSIVVKSSVLLSIWIFVIPVLIGLLFELLVIVPMRVPVDESPVFLLYQDWALGLVFLKIWTRLVMLDHVMPLMDDSWRVKFERVREDGFSRLQAFWVLQEIVIPIIIKLLTALCVPYVLARGVFPVFGYPLVVNSAVYRFAWLGCLGMSLLCFCAKRFHVWFTNLHNSIRDDRYLIGRRLHNYGEDDAQHEGETANVPDPQDTAVGLRHRRNIPAVG 1049
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Fro12g02600 1049 Coils Coil 259 279 - -
Fro12g02600 1049 ProSiteProfiles Zinc finger RING-CH-type profile. 37 98 IPR011016 GO:0008270(InterPro)
Fro12g02600 1049 MobiDBLite consensus disorder prediction 1 37 - -
Fro12g02600 1049 MobiDBLite consensus disorder prediction 681 706 - -
Fro12g02600 1049 Pfam RING-variant domain 45 91 IPR011016 GO:0008270(InterPro)
Fro12g02600 1049 FunFam Probable E3 ubiquitin ligase SUD1 30 103 - -
Fro12g02600 1049 Gene3D Zinc-RING finger domain, C3HC4 (zinc finger) 29 103 IPR013083 -
Fro12g02600 1049 PANTHER SSM4 PROTEIN 37 1026 - GO:0030176(PANTHER)|GO:0030433(PANTHER)
Fro12g02600 1049 MobiDBLite consensus disorder prediction 13 33 - -
Fro12g02600 1049 SUPERFAMILY RING-U-box 39 96 - -
Fro12g02600 1049 CDD RING-CH-C4HC3-MARCH6 44 93 - -
Fro12g02600 1049 SMART ringv-2 44 92 IPR011016 GO:0008270(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Fro12g02600 K10661 E3 ubiquitin-protein ligase MARCH6 [EC:2.3.2.27]
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Event-related genes

Select Gene_1 Gene_2 Event_name
92802 Fro12g02600 Fro3g01079
92803 Fro12g02600 Fro7g00874
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Fro Fro-Chr12:33833989 Fro7g00874 Fro-Chr7:10485592 dispersed
Fro Fro-Chr12:33833989 Fro3g01079 Fro-Chr3:16810150 wgd
Fro Fro-Chr12:33833989 Fro3g01094 Fro-Chr3:17013240 wgd
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Fro1g00340 . 68 131 HMGR gene family AT4G34100 40.625 9.96e-10 56.6
Fro1g00809 ACH 68 118 HMGR gene family AT4G34100 43.137 3.70e-12 60.5
Fro3g01079 ACH 67 1067 HMGR gene family AT4G34100 70.559 0.0 1439.0
Fro3g01094 . 67 1067 HMGR gene family AT4G34100 70.259 0.0 1430.0
Fro4g01093 . 85 631 HMGR gene family AT1G76490 65.364 0.0 769.0
Fro6g00913 . 68 129 HMGR gene family AT4G34100 43.548 6.15e-11 60.8
Fro7g00874 ACH 35 1107 HMGR gene family AT4G34100 75.531 0.0 1603.0
Fro8g00126 ACH,WGDA 68 141 HMGR gene family AT4G34100 33.784 8.86e-10 57.4
Fro8g01531 . 311 632 HMGR gene family AT1G76490 82.919 0.0 565.0
Fro8g01532 . 51 298 HMGR gene family AT1G76490 52.672 9.12e-80 250.0
Fro8g01572 . 51 631 HMGR gene family AT1G76490 69.257 0.0 829.0
Fro10g01182 WGDA 68 133 HMGR gene family AT4G34100 37.879 3.04e-09 55.8
Fro11g01543 ACH,WGDA 68 129 HMGR gene family AT4G34100 37.097 5.15e-09 54.7
Fro11g01955 . 51 632 HMGR gene family AT1G76490 70.216 0.0 852.0
Fro11g03223 . 51 632 HMGR gene family AT1G76490 73.401 0.0 879.0
Fro11g03260 . 51 632 HMGR gene family AT1G76490 73.401 0.0 879.0
Fro12g00612 ACH 68 133 HMGR gene family AT4G34100 35.821 2.62e-11 60.5
Fro12g02600 ACH 67 1104 HMGR gene family AT4G34100 71.415 0.0 1491.0
Fro13g00119 ACH,WGDA 68 142 HMGR gene family AT4G34100 36.0 2.69e-10 59.3
Fro14g01256 ACH 68 148 HMGR gene family AT4G34100 31.707 9.98e-10 56.2
Fro15g01443 ACH 68 118 HMGR gene family AT4G34100 41.176 4.60e-11 59.7
Fro16g00730 ACH 68 129 HMGR gene family AT4G34100 41.935 3.29e-10 58.9
Fro17g01105 ACH 68 124 HMGR gene family AT4G34100 42.105 3.85e-09 55.8
Fro18g01614 . 68 129 HMGR gene family AT4G34100 38.71 1.61e-09 56.2
Fro18g01861 . 51 632 HMGR gene family AT1G76490 71.953 0.0 859.0
Fro10000352.1g00007 . 68 129 HMGR gene family AT4G34100 38.71 1.49e-09 56.2
Fro10000372.1g00005 . 51 632 HMGR gene family AT1G76490 72.513 0.0 862.0
Fro10000246.1g00005 . 67 1104 HMGR gene family AT4G34100 71.319 0.0 1490.0