AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Fro13g01409 ATGGGGGAAACGAAATCGACATCAGAGAGCAGATTGAAGCCATCGACGAAGTGTTCTGACGAGAATCAAGTGCCGCTGAAGTGTAGAAACAACAATGTGCAGTCGAATTTGAAGCCCAGATCGATTTGGGGTTCGAATATTGTTAAAGGCTTTTCTGGTGATAAGAAAACAAGATCGCAACAAGTGGGGAAGAAATCTCAACAGCAACCTGTTACAACAGTCTCCAACACGAGTTCTAGAAACCCTTTTGGTTCTAATCGAGCGAAACGGTCTCTTATCGGAGATTTATCGTGTTCTGTCACTGCTACACAGGTTCATCCTCAAGGGGTTCATCATCATTGTGAACAGAACCAGAGGCTGTATAAATCGTCGTCTTCTTCGGGCTCTCGTGATCTGTTTGCTGAGCTTGATCAGCTCAGAAGCTTGCTTCAAGAGTCTAAAGATAGAGAAGCTAAGTTGCAAGCTGAGTTGTGTGATTTCAAGAAAAAAAATCTCAAGGCTTTGGAGCTCGAACGGATAGTTGAATCGAAGACTAGTGAAATCGAATCTCTTAAAAGCAAGGTCGATTTGCTCGAATCGGAGAACACTAGTCTTTCTGAGCAGTTAAATTGTCAGCAGGTGCAAGAAAATATAAAAAAAGGGGTTGTTAATAATAGTGTTGAGGTAGATGTTCTTAAGTTGAGGAGGTTGAATGCTGAGCTTCATCTTCAAAAGAGAAATCTTTGTTGCAGAATATCTTCAATGGAGTCTGAATTAGCTGCCATTGCCAAAGATTCTGAGAATGAATTTGTTAAGAAGATAAAAGCTGAGGCATCTATGTTAAGACAAACAAATGAAGATTTATGTAAACAAGTTGAAGATCTACAAGTAAGTCGATTAAACGAGGTGGAGGAGCTTGTGTATCTTAGATGGGTCAACTCTTGTCTTAAGAATGAGTTGCAAAATTCGGCGTTTGTGGCTTCTGAGATAACATCAAGTCCAGCTTCTGTTGGATGGCTTAATGGTTCTATATCAAGTGATGATAGTTCTGAACATGGTAGTGCCCAAAAGAAGTTAAGTTTGATCAAGAAAATGAAGAAATGGCCTGTTCTAGATGAAGAAACGAACACCTCTGAACCGACGAGCTATAAACTGAATCTTGGTTGGTCTGAAGGAAGAAGACATTCTATCAGTGGAGCAAATTGCTGTCAAGAAGATCTAGTGGTGAATAAAAGAAGACAATCTGATGGTTTCATATGTTCAATGGATATGGAGGGTGTAAATGATTTGAATGTGATCCAAGGGTCACAATTGCGTGAAGCTACGAAACTGAAAACATTTTTGGATGTTGAAAAAAGGGCGTTGCGTGTTCCTAATCCCCCTCCGAGGCCTTCTAGCTTTACTTCTAAGGAACATACAGAGGTTACTAATCAAGTTTCACCGCCACCTCCACCACCACCACCACCTCCGCCGCCGCCGCCTCCAAAGTTCAGGGGAAGAAACAACGGTGGAGGGGTTGTTCAACGAGCTCCAGAAGTGGTAGAGTTTTATCATTCTCTTATGAAAAGGGACTCTAGGAAAGACTCACTAAATGACGGGATTTGTGATGCCTTAGATGTCAATAATGTCCGAACTAGTATGATTGGTGAGATTGAAAACCGGTCATCACATTTGCTTGCAATAAAGGAGGATGTTGAGACTCAAGGGGAGTTTGTGAATTCTTTAATACGCGAGGTCAACAATGCTGTTTATCCGGATATAGAAGATGTGGTGGCTTTTGTGAACTGGCTTGATGATGAACTTGGCTTTCTTGTGGATGAGAGGGCTGTGCTGAAACACTTTGATTGGCCGGAGAAGAAAGCCGACACATTAAGAGAGGCAGCATTTGCATATCGCGATCTAACGAAGCTGGAGCATGAAATTTCAAATTACAAGGACAATTTCCACATACCATGTGACTTGGCATTGAAGAAAATGGTTTCCTTGTCTGAAAAGATGGAGCGTATCGTTAATAACCTTCTTAGAACAAGAGATCTGTTGATGCGTAATTGCAAAGAGTTCCATATTCCCGCAGATTGGATGCTTGATTCGGGAATATTAAACAAGATTAAGCTAGGATCGGTTAAGTTGGCAAAGAAATACTTGAGAAGAGTTGCTACAGAACTTCAAACGAAGGGAATGTCGGAGAAAGATCCATCAATGGACTATATGCTACTTCAAGGAGTGCGATTTGCTTTCCGCATTCATCAGTTTGCTGGTGGATTTGATGTCGATACAATGCATGCATTCGAGGAGCTTCGCAATGTAGCTCTTGTTTTGAACAAAAAGTAG 2310 41.34 MGETKSTSESRLKPSTKCSDENQVPLKCRNNNVQSNLKPRSIWGSNIVKGFSGDKKTRSQQVGKKSQQQPVTTVSNTSSRNPFGSNRAKRSLIGDLSCSVTATQVHPQGVHHHCEQNQRLYKSSSSSGSRDLFAELDQLRSLLQESKDREAKLQAELCDFKKKNLKALELERIVESKTSEIESLKSKVDLLESENTSLSEQLNCQQVQENIKKGVVNNSVEVDVLKLRRLNAELHLQKRNLCCRISSMESELAAIAKDSENEFVKKIKAEASMLRQTNEDLCKQVEDLQVSRLNEVEELVYLRWVNSCLKNELQNSAFVASEITSSPASVGWLNGSISSDDSSEHGSAQKKLSLIKKMKKWPVLDEETNTSEPTSYKLNLGWSEGRRHSISGANCCQEDLVVNKRRQSDGFICSMDMEGVNDLNVIQGSQLREATKLKTFLDVEKRALRVPNPPPRPSSFTSKEHTEVTNQVSPPPPPPPPPPPPPPPKFRGRNNGGGVVQRAPEVVEFYHSLMKRDSRKDSLNDGICDALDVNNVRTSMIGEIENRSSHLLAIKEDVETQGEFVNSLIREVNNAVYPDIEDVVAFVNWLDDELGFLVDERAVLKHFDWPEKKADTLREAAFAYRDLTKLEHEISNYKDNFHIPCDLALKKMVSLSEKMERIVNNLLRTRDLLMRNCKEFHIPADWMLDSGILNKIKLGSVKLAKKYLRRVATELQTKGMSEKDPSMDYMLLQGVRFAFRIHQFAGGFDVDTMHAFEELRNVALVLNKK 769
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Fro13g01409 769 MobiDBLite consensus disorder prediction 52 86 - -
Fro13g01409 769 MobiDBLite consensus disorder prediction 448 498 - -
Fro13g01409 769 MobiDBLite consensus disorder prediction 7 42 - -
Fro13g01409 769 Coils Coil 167 208 - -
Fro13g01409 769 Coils Coil 264 284 - -
Fro13g01409 769 Coils Coil 620 640 - -
Fro13g01409 769 PANTHER PROTEIN CHUP1, CHLOROPLASTIC 52 761 IPR040265 GO:0009658(PANTHER)|GO:0009707(PANTHER)
Fro13g01409 769 SUPERFAMILY Formin homology 2 domain (FH2 domain) 477 629 - -
Fro13g01409 769 MobiDBLite consensus disorder prediction 1 87 - -
Fro13g01409 769 Coils Coil 129 156 - -
Fro13g01409 769 MobiDBLite consensus disorder prediction 471 491 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Fro13g01409 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Fro Fro-Chr13:23505982 Fro3g00319 Fro-Chr3:4117231 dispersed
Fro Fro-Chr13:23505982 Fro13g00649 Fro-Chr13:8323594 transposed