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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Fro14g01287 ATGGAAACCCAACAGAAACCCGTGATGATCGTCGGAATCGACGACAGTGAGCACAGCTTCTACGCACTTGAATGGACGTTGGATCACTTCATAGCACCATCGGCTCCAAATTCTCCGTTCAAACTCATCATCGTTCACTCAAAACCTTCTCCGACTGCTGCAATCGGATTCGCCGGACCTGGTGCGGCGGATGTTTATCCGTTTGTGGATTCTGATTTGAAGAAGATCGCTGCTCGAGTGGCGGAACGAGCCAAGGAGCTTTGCCATTCGAAATTGGTGGATGATGTGATTGTTGAAGTTGTCGAAGGCGATGCAAGGAACGTTCTATGTGAAGCTGTAGAGAGGCACCATGCTACGATGCTGGTAGTCGGAAGCCATGGCTATGGAGCAGTTAAAAGGGCGGTTTTGGGGAGTGTAAGTGACTATGTTACTCATCATGCCCACTGCACCGTGATGATTGTGAAGAAGCCAAAGACCAAACACTCTGGTTAG 492 49.39 METQQKPVMIVGIDDSEHSFYALEWTLDHFIAPSAPNSPFKLIIVHSKPSPTAAIGFAGPGAADVYPFVDSDLKKIAARVAERAKELCHSKLVDDVIVEVVEGDARNVLCEAVERHHATMLVVGSHGYGAVKRAVLGSVSDYVTHHAHCTVMIVKKPKTKHSG 163
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Fro14g01287 163 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 10 157 - -
Fro14g01287 163 CDD USP-Like 9 154 - -
Fro14g01287 163 Gene3D HUPs 2 162 IPR014729 -
Fro14g01287 163 Pfam Universal stress protein family 9 155 IPR006016 -
Fro14g01287 163 PANTHER ADENINE NUCLEOTIDE ALPHA HYDROLASES-LIKE SUPERFAMILY PROTEIN 2 159 - -
Fro14g01287 163 PRINTS Universal stress protein signature 133 155 IPR006015 -
Fro14g01287 163 PRINTS Universal stress protein signature 6 24 IPR006015 -
Fro14g01287 163 PRINTS Universal stress protein signature 115 127 IPR006015 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Fro14g01287 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Fro Fro-Chr14:20481630 Fro17g00190 Fro-Chr17:1830079 dispersed
Fro Fro-Chr14:20481630 Fro13g01779 Fro-Chr13:26732120 transposed