AGRP
Asteraceae Genomic Research Platform
Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Fro14g01326 | ATGCCTCGGTATTACTGTGATTACTGCGACACTTACTTGACTCATGATTCTCCTTCTGTAAGGAAGCAGCACAATGCAGGATACAAACACAAGGCAAATGTGCGGATCTACTATCAACAATATGAGGCACAACAAAACCAATATCTGATTGACCAAAAAGTCAAAGAGCATCTTGGACAAGCTGCTGCGTATCAACAAGTTGGTGCTGCTTACAACCAACTCAGACCTCGTCTTCCTGTTTTACCTACTCCAATGATGCCAATTCCTGGGAATCCAATGATGCCAATGCCTGGAATGAGGCCACTAGCTCCTTTGCCAAGACCTATTCCTGGATATCCTGGCATGCCCCCAATGATGGCACCACCCGGTGCACCTTCCGTGCCGGGTCAGGCCAACCCTTCCGTGCCCGGTCAGGTCAACCCATCCATGCCCGGTCAGGTCAACCCATCCATACCCGGTCAGGTTAACAATGGTGCGCCAAGGCCCATAACTATTAGTGCCCCAACGATGGCCCCAGGGAGCTCAGGAACCCCTACTTCTGGAACACCACCGCCAATGTTTAACCCAGCTATGTATCAAGCCAACCCGACAGCACCAGCACCGGCATCTGGAGGTTTTGAAAGTCCAAATGCTAGCGCCCAACCTCAGGAGGCTAACCATTAA | 663 | 50.98 | MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRIYYQQYEAQQNQYLIDQKVKEHLGQAAAYQQVGAAYNQLRPRLPVLPTPMMPIPGNPMMPMPGMRPLAPLPRPIPGYPGMPPMMAPPGAPSVPGQANPSVPGQVNPSMPGQVNPSIPGQVNNGAPRPITISAPTMAPGSSGTPTSGTPPPMFNPAMYQANPTAPAPASGGFESPNASAQPQEANH | 220 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Fro14g01326 | 220 | MobiDBLite | consensus disorder prediction | 155 | 220 | - | - | |
| Fro14g01326 | 220 | SMART | ZnF-U1-5 | 1 | 37 | IPR003604 | GO:0003676(InterPro)|GO:0008270(InterPro) | |
| Fro14g01326 | 220 | MobiDBLite | consensus disorder prediction | 155 | 177 | - | - | |
| Fro14g01326 | 220 | FunFam | U1 small nuclear ribonucleoprotein C | 1 | 61 | - | - | |
| Fro14g01326 | 220 | PIRSF | U1-C | 1 | 219 | IPR017340 | GO:0000387(InterPro)|GO:0000398(InterPro)|GO:0005685(InterPro) | |
| Fro14g01326 | 220 | Gene3D | Classic Zinc Finger | 1 | 60 | - | - | |
| Fro14g01326 | 220 | Pfam | U1 zinc finger | 1 | 38 | IPR013085 | GO:0008270(InterPro) | |
| Fro14g01326 | 220 | SUPERFAMILY | beta-beta-alpha zinc fingers | 1 | 56 | IPR036236 | - | |
| Fro14g01326 | 220 | Hamap | U1 small nuclear ribonucleoprotein C [SNRPC]. | 1 | 173 | IPR017340 | GO:0000387(InterPro)|GO:0000398(InterPro)|GO:0005685(InterPro) | |
| Fro14g01326 | 220 | PANTHER | U1 SMALL NUCLEAR RIBONUCLEOPROTEIN C | 1 | 208 | IPR017340 | GO:0000387(InterPro)|GO:0000395(PANTHER)|GO:0000398(InterPro)|GO:0005685(PANTHER)|GO:0005685(InterPro)|GO:0030627(PANTHER) | |
| Fro14g01326 | 220 | ProSiteProfiles | Zinc finger matrin-type profile. | 4 | 36 | IPR000690 | GO:0003676(InterPro)|GO:0005634(InterPro)|GO:0008270(InterPro) |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Fro14g01326 | K11095 | U1 small nuclear ribonucleoprotein C |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Fro | Fro-Chr13:22987151 | Fro14g01326 | Fro-Chr14:21046854 | dispersed |