AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Fro14g01375 ATGCCGACCAACTTCGAACGGAATCTCAACCTCTGCTTCACCAAACTCAAACGCCACCACTCCCCACCACCACCACCACCACCACCACCACCACCGCCACCATCTCACCACCGCCACCGCCGCCACCACTCCGAAACCACCCTCATCAAAAACTTCAACACCCTCTACAACCTCCCTCCCGCCTCCGCCTCCGACTCCGACGACGGCTCCGCCACCACCACCGCCGCCGCCGACTTCTCCACCGTCGTGGCCTCCGACCGCTTCTTCTTCTCCTCCCCCGGCCGCTCCAACTCCATCGTCGACTCCTCCGCCTCCTCCTCCTCCGTCGCCTCCACCTCCTTCACCGGCGCCGGCGACGGCGGCGGCGTCGCCATCCCGACGATTTCGCCGGACCCGTACTTTGACTTCAGAAGATCGATGCAGGAGATGGTGGAGGCACGTGACCTCATCGATGTTCGTGCCGATTGGGATTATTTGCACGAGCTTCTCACGTGCTATCTGGATTTGAACCCCAAGAGTGCTCATAAGTTTATCGTCGGAGCTTTTGCTGATCTTCTGGTCACTCTCATGGCGGAAGGCGGTGGTGGTCGCCGGAGAAGTTGA 603 61.19 MPTNFERNLNLCFTKLKRHHSPPPPPPPPPPPPPSHHRHRRHHSETTLIKNFNTLYNLPPASASDSDDGSATTTAAADFSTVVASDRFFFSSPGRSNSIVDSSASSSSVASTSFTGAGDGGGVAIPTISPDPYFDFRRSMQEMVEARDLIDVRADWDYLHELLTCYLDLNPKSAHKFIVGAFADLLVTLMAEGGGGRRRS 200
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Fro14g01375 200 Pfam Transcriptional repressor, ovate 129 189 IPR006458 -
Fro14g01375 200 MobiDBLite consensus disorder prediction 16 43 - -
Fro14g01375 200 MobiDBLite consensus disorder prediction 19 33 - -
Fro14g01375 200 NCBIfam uncharacterized plant-specific domain TIGR01568 126 190 IPR006458 -
Fro14g01375 200 SUPERFAMILY Formin homology 2 domain (FH2 domain) 24 34 - -
Fro14g01375 200 PANTHER TRANSCRIPTION REPRESSOR OFP7-RELATED 36 190 IPR038933 GO:0045892(InterPro)
Fro14g01375 200 ProSiteProfiles OVATE domain profile. 125 188 IPR006458 -
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Fro14g01375 - -
leaf

Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Fro Fro-Chr14:21728613 Fro5g00994 Fro-Chr5:16499217 dispersed
Fro Fro-Chr14:21728613 Fro15g01962 Fro-Chr15:34080735 transposed
leaf

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Fro Ovate 1.4e-24 No_clan TF OFP