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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Fro14g01434 ATGTCAAGCACATGTGAAGGTAAGAGTTCATGGCCTGAACTTGTAGGCACGAGGGGAGACGTAGCAGCTGCTACGATTGAGAGAGAGAACCCACGGGTCGATGCTATTGTTGTCTTGGAGGGGTCTTTTGTGACAACTGATTTTCGATGCGACCGTGTACGGGTGTGGGTGAACCGTAACGGGGTGGTTGTTAGGCTTCCTTCCATTGGGTAA 213 51.17 MSSTCEGKSSWPELVGTRGDVAAATIERENPRVDAIVVLEGSFVTTDFRCDRVRVWVNRNGVVVRLPSIG 70
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Fro14g01434 70 PRINTS Potato inhibitor I signature 10 23 IPR000864 GO:0004867(InterPro)|GO:0009611(InterPro)
Fro14g01434 70 PRINTS Potato inhibitor I signature 35 46 IPR000864 GO:0004867(InterPro)|GO:0009611(InterPro)
Fro14g01434 70 PRINTS Potato inhibitor I signature 47 57 IPR000864 GO:0004867(InterPro)|GO:0009611(InterPro)
Fro14g01434 70 SUPERFAMILY CI-2 family of serine protease inhibitors 4 70 IPR036354 -
Fro14g01434 70 Gene3D Trypsin Inhibitor V, subunit A 1 69 - -
Fro14g01434 70 ProSitePatterns Potato inhibitor I family signature. 11 22 IPR000864 GO:0004867(InterPro)|GO:0009611(InterPro)
Fro14g01434 70 FunFam Serine protease inhibitor, potato inhibitor I-type family protein 2 70 - -
Fro14g01434 70 PANTHER PROTEIN, PUTATIVE, EXPRESSED-RELATED 3 70 IPR000864 GO:0004867(InterPro)|GO:0009611(InterPro)
Fro14g01434 70 Pfam Potato inhibitor I family 8 70 IPR000864 GO:0004867(InterPro)|GO:0009611(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Fro14g01434 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Fro Fro-Chr14:22565239 Fro14g01434 Fro-Chr14:22650622 dispersed
Fro Fro-Chr14:22614645 Fro14g01434 Fro-Chr14:22650622 dispersed
Fro Fro-Chr14:22619051 Fro14g01434 Fro-Chr14:22650622 dispersed
Fro Fro-Chr14:22627790 Fro14g01434 Fro-Chr14:22650622 dispersed
Fro Fro-Chr14:22630824 Fro14g01434 Fro-Chr14:22650622 tandem