AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Fro18g01568 ATGGAAGAATCAAGAAATCCATTTCTTCAGTCTAATGTTATTGAATCTGCTAATGGTTATAGCTCAAGATTCAACCCTGATAAACGTGGGCGCCAAAACTTCATTGCACCTGGTTTTCCAGGGTTGAAAAAACGAGGTCATGCACTTGGAAACCGTTCTTGGATCAAAATTGAGCAAAATGGGAACTCTAAAGTTGTGGAATTGGATAAGGCTACTGTAATGAGACATTGTTCTTTACCTGCTAGAGATCTTCGTCTTTTGGATCCACTTTTTATATATCCATCCACTATATTAGGTCGTGAGAAGGCTATTGTAGTTAGTCTTGAACAGATTAGATGTATAATCACAGCTGATGAGGTTTTCCTTATGAATTCATTGGACGGATCTGTAGTTCAGTATAAATCTGAATTGTGTAAACGTCTTCAGCAAGAGAAATATCACTCAGATGGCCTACCATTTGAGTTTAGGGCATTGGAACTAGCTTTGGAGTTTGCATGCCTCACTCTGGATACTCAGGTGAAAGAGTTGGAAATGGAAATTCATCCTGTGCTTGATGAACTTGCAAAATCTATAAGCACTCTCAATCTCGAGCGTGTTCGTAGATTCAAAGGCCACCTTCTAGCATTGACTCAACGGGTGCAAAAGGTTTGTGATGAAATAGAACAGCTAATGAATGATGATGGTGATATGGCTGAGATGTACTTAACTGAGAAGAAACAAAGGAACTCATGTAACGATTTATATGATCAAGACCAAGGGAATAATGTTGTTGGGCCTGGAGTGGGCTTAGGATCGAAATCTGCTCCTGTATCTCCTGTGGGCTCCACAAGTGGTGCAAATAACCTGCAAAGGGCGTTTAGTAATGTAAGTGCGCACAAACATGGAAGCTTGTTTGGTTCATCTGTTACCGGTGAAACTGAAAATATAGATCAACTTGAGATGTTGCTGGAAGCCTACTTTGTTGGAATTGATAACACTCTAAACAAGTTGCTTTCGCTCAAGGAATATATTGATGACACTGAAGATCTGATCAACATTAAACTTGGAAATGTCCAGAATAAGCTGATTAAGTTCGAGCTGCTCTTGACTGCGGCTACTTTTCTGGCAACCGTATTTGCAGTTGTGACAGCTGTATTTGGAATGAACTTTGAGGATGAAGTTTTCGATGAGCCAAACAGATTCAATTGGGTCGTTTCTATCAGCGCAGCGTTATGTGGAATTTTGTACATATGTTTCTTGCTTTATTTTAAACATAAGAAAGTTTTCCCTCTCTAG 1275 39.53 MEESRNPFLQSNVIESANGYSSRFNPDKRGRQNFIAPGFPGLKKRGHALGNRSWIKIEQNGNSKVVELDKATVMRHCSLPARDLRLLDPLFIYPSTILGREKAIVVSLEQIRCIITADEVFLMNSLDGSVVQYKSELCKRLQQEKYHSDGLPFEFRALELALEFACLTLDTQVKELEMEIHPVLDELAKSISTLNLERVRRFKGHLLALTQRVQKVCDEIEQLMNDDGDMAEMYLTEKKQRNSCNDLYDQDQGNNVVGPGVGLGSKSAPVSPVGSTSGANNLQRAFSNVSAHKHGSLFGSSVTGETENIDQLEMLLEAYFVGIDNTLNKLLSLKEYIDDTEDLINIKLGNVQNKLIKFELLLTAATFLATVFAVVTAVFGMNFEDEVFDEPNRFNWVVSISAALCGILYICFLLYFKHKKVFPL 424
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Fro18g01568 424 CDD Mrs2-Mfm1p-like 54 421 IPR039204 -
Fro18g01568 424 PANTHER RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL 36 421 IPR039204 GO:0015095(PANTHER)|GO:0015693(PANTHER)
Fro18g01568 424 SUPERFAMILY Magnesium transport protein CorA, transmembrane region 361 413 IPR045863 -
Fro18g01568 424 FunFam Magnesium transporter MRS2-1 41 125 - -
Fro18g01568 424 Pfam Magnesium transporter MRS2-like 59 242 - -
Fro18g01568 424 Gene3D Magnesium transport protein CorA, transmembrane region 128 355 - -
Fro18g01568 424 Coils Coil 206 226 - -
Fro18g01568 424 Gene3D - 45 125 - -
Fro18g01568 424 Gene3D Magnesium transport protein CorA, transmembrane region 362 420 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Fro18g01568 K16075 magnesium transporter
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
2515798 Fro Fro11g00218 Fro-Chr11:2034549 Fro18g01568 Fro-Chr18:22574494
2525196 Fro Fro16g00331 Fro-Chr16:3795642 Fro18g01568 Fro-Chr18:22574494
2529039 Fro Fro18g01568 Fro-Chr18:22574494 Fro8g02002 Fro-Chr8:29177596
2544628 Fro Fro18g01568 Fro-Chr18:22574494 Fro17g01592 Fro-Chr17:25695008
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Fro3g00894 . 47 484 MRS2 gene family AT3G19640 66.594 0.0 567.0
Fro4g00777 . 47 484 MRS2 gene family AT3G19640 66.667 0.0 565.0
Fro6g00234 ACH 123 459 MRS2 gene family AT5G22830 75.74 1.06e-174 496.0
Fro8g02002 . 4 386 MRS2 gene family AT5G09690 73.057 0.0 551.0
Fro11g00218 ACH 1 442 MRS2 gene family AT1G16010 78.027 0.0 676.0
Fro11g01782 . 1 386 MRS2 gene family AT5G09690 71.465 0.0 550.0
Fro12g00785 . 47 483 MRS2 gene family AT3G19640 55.53 2.51e-155 444.0
Fro12g01948 . 1 436 MRS2 gene family AT3G58970 66.161 0.0 561.0
Fro15g01767 ACH 123 459 MRS2 gene family AT5G22830 80.119 0.0 530.0
Fro16g00331 ACH 1 442 MRS2 gene family AT1G16010 76.063 0.0 665.0
Fro17g00278 . 14 386 MRS2 gene family AT5G09690 66.057 2.66e-173 486.0
Fro17g01592 ACH 1 442 MRS2 gene family AT1G16010 80.313 0.0 712.0
Fro17g01701 ACH 67 484 MRS2 gene family AT3G19640 62.85 1.51e-161 460.0
Fro18g01568 . 1 421 MRS2 gene family AT2G03620 64.637 1.80e-177 500.0
Fro10000369.1g00003 . 1 421 MRS2 gene family AT2G03620 64.637 1.80e-177 500.0