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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Fro18g01571 ATGGCTCTTTTGGAATCAAACAAAAACAGAGGAGAGGTGAGAGTTCATGAGAATTTAGATGATCTGAGCACGAATTTGGCTGATTATATAGCAGAATTATCCGAGGCATCGGTTAAAGAACGTGGCTTTTTTTCCATTGCTTTATCTGGTGGTTCCATAATTAGCTTGATGAGGAATCTGTGTGGAGCTCCTTATAACAAGACTGTTGATTGGTCAAAATGGTATATATTTTGGGCAGATGAACGAGTGGTTGCCAAGACTCATGTCGATAGCAACTATAAGCTTGCTAAAGATCATCTTTTGTCTAAGTTGCCTATTGTTCCTAGTCATGTACATTCCATCAATGATTCCCTCACTGCAGAAGAAGCTGCAAATGAATACGAGTATGTAATCAGGCAACTGGTCAGAACCCGTGTGGTCAATGTGTCCGAGGTCAGCGACTGCCCGAAGTTTGACCTGATCCTTCTAGGGATGGGCCCGGATGGCCATGTGGCGTCTTTGTTTCCTAATCATTCGGTTCTTGAGGAAAAGAATGAATGGGTGACATTTATCACCACTTCTCCTAAGCCTCCACCTGAAAGAATCACCTTCACACTGCCCGTAATCAACTCTGCCGCCAATGTGGCAGTGGTGGTTACAGGTAGCGGGAAAGCTGAAGCTTCCAAGCTGGCGATAGATGACGTTGGACCCGAGGGCCCGGTGTTGCCAGCTAGGATGATTGAACCAGCTGTAGGGAAACTGGTGTGGTTTTTGGATAAACAGGCTGCTTCAAAGCTCAAGGGCTTTTCTCAATTTTCTAAGTAG 804 45.02 MALLESNKNRGEVRVHENLDDLSTNLADYIAELSEASVKERGFFSIALSGGSIISLMRNLCGAPYNKTVDWSKWYIFWADERVVAKTHVDSNYKLAKDHLLSKLPIVPSHVHSINDSLTAEEAANEYEYVIRQLVRTRVVNVSEVSDCPKFDLILLGMGPDGHVASLFPNHSVLEEKNEWVTFITTSPKPPPERITFTLPVINSAANVAVVVTGSGKAEASKLAIDDVGPEGPVLPARMIEPAVGKLVWFLDKQAASKLKGFSQFSK 267
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Fro18g01571 267 SUPERFAMILY NagB-RpiA-CoA transferase-like 13 260 IPR037171 -
Fro18g01571 267 CDD 6PGL 20 251 IPR005900 GO:0005975(InterPro)|GO:0006098(InterPro)|GO:0017057(InterPro)
Fro18g01571 267 NCBIfam 6-phosphogluconolactonase 15 259 IPR005900 GO:0005975(InterPro)|GO:0006098(InterPro)|GO:0017057(InterPro)
Fro18g01571 267 PANTHER 6-PHOSPHOGLUCONOLACTONASE 5 260 IPR039104 -
Fro18g01571 267 FunFam Probable 6-phosphogluconolactonase 8 260 - -
Fro18g01571 267 Pfam Glucosamine-6-phosphate isomerases-6-phosphogluconolactonase 19 249 IPR006148 GO:0005975(InterPro)
Fro18g01571 267 Coils Coil 19 39 - -
Fro18g01571 267 Gene3D - 8 262 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Fro18g01571 K01057 6-phosphogluconolactonase [EC:3.1.1.31]
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Event-related genes

Select Gene_1 Gene_2 Event_name
92845 Fro13g00142 Fro18g01571
397166 Fro18g01571 Fro3g00201
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
2529042 Fro Fro18g01571 Fro-Chr18:22612895 Fro4g01314 Fro-Chr4:17776921
2564254 Fro Fro13g00142 Fro-Chr13:1878472 Fro18g01571 Fro-Chr18:22612895
2576816 Fro Fro18g01571 Fro-Chr18:22612895 Fro3g00201 Fro-Chr3:2139529