Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Fro2g01339 | ATGAACAAACTGGGCAGAGGGCATCGTGACAAAGTTCAACAATTCATGACAATCACTGGAGCAAGTGAAAAAGTTGCTCTCCATGCTTTGAAGACCAGTGATTGGCATCTTGATGGCGCATTTGATATCTTTTACAGTCAGCCTCATGCAAAATCATTCACAGATACACGGCATTTAGAGGAACTGTACAACAGATACAAAGATCCTTATGCTGATATGATTATGGCTGACGGCATTAGTACCCTCTGTAATGACCTTCAGGTGGATCCTCAAGATATTGTTATGTTGGTTGTTTCGTGGCACATGAAGGCTGCTACCATGTGTGAATTCTCAAAGCAGGAATTTATTGGTGGCTTGCAGTCTTTAGGGATAGATTCGTTGGAGAAGTTCCGTGAACGGATACCACTTCTGCGTTCTGAGCTGAAAGATGATCAAAAATTCAAGGAGATATATAATTTTGCATTCGGCTGGGCAAAAGAGAAGGGTCAGAAGTCTTTGGCATTGGATACGGCAATAGGGATGTGGCAATTGCTGTTTGAAGAAAAACAGTGGCCGTTGGTTGATCATTGGTGCGAGTTTTTACAGGCACGACATAATAAAGCTATTTCTCGAGATACTTGGTCTCAGTTACTGGAATTTGCAAGAAGTGTGGACCCTACACTATCAAATTATGATGCTGAAGGTGCTTGGCCATACCTGATTGATGAGTTTGTGGAGTACTTAACAGAAAACGGCATAATTCAGAAGGGGAGGATGAAGGAGTGGTTATAG | 771 | 42.15 | MNKLGRGHRDKVQQFMTITGASEKVALHALKTSDWHLDGAFDIFYSQPHAKSFTDTRHLEELYNRYKDPYADMIMADGISTLCNDLQVDPQDIVMLVVSWHMKAATMCEFSKQEFIGGLQSLGIDSLEKFRERIPLLRSELKDDQKFKEIYNFAFGWAKEKGQKSLALDTAIGMWQLLFEEKQWPLVDHWCEFLQARHNKAISRDTWSQLLEFARSVDPTLSNYDAEGAWPYLIDEFVEYLTENGIIQKGRMKEWL | 256 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Fro2g01339 | 256 | FunFam | Defective in cullin neddylation protein | 143 | 248 | - | - | |
| Fro2g01339 | 256 | Pfam | Cullin binding | 130 | 240 | IPR005176 | - | |
| Fro2g01339 | 256 | Gene3D | - | 52 | 142 | - | - | |
| Fro2g01339 | 256 | FunFam | Defective in cullin neddylation protein | 53 | 142 | - | - | |
| Fro2g01339 | 256 | Pfam | UBA-like domain | 9 | 47 | - | - | |
| Fro2g01339 | 256 | PANTHER | RP42 RELATED | 24 | 244 | IPR014764 | GO:0000151(PANTHER)|GO:0031624(PANTHER)|GO:0032182(PANTHER)|GO:0045116(PANTHER)|GO:0097602(PANTHER) | |
| Fro2g01339 | 256 | CDD | UBA-DCNL | 8 | 48 | - | - | |
| Fro2g01339 | 256 | FunFam | Defective in cullin neddylation protein | 6 | 47 | - | - | |
| Fro2g01339 | 256 | SUPERFAMILY | UBA-like | 7 | 46 | IPR009060 | GO:0005515(InterPro) | |
| Fro2g01339 | 256 | Gene3D | - | 6 | 47 | - | - | |
| Fro2g01339 | 256 | Gene3D | Cullin, PONY binding domain | 143 | 250 | IPR042460 | - | |
| Fro2g01339 | 256 | ProSiteProfiles | DCUN1 domain profile. | 54 | 242 | IPR005176 | - |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Fro2g01339 | K17822 | DCN1-like protein 1/2 |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Fro | Fro-Chr11:9868445 | Fro2g01339 | Fro-Chr2:16647431 | dispersed | |
| Fro | Fro-Chr2:16647431 | Fro7g00612 | Fro-Chr7:7274420 | dispersed | |
| Fro | Fro-Chr12:29080677 | Fro2g01339 | Fro-Chr2:16647431 | wgd |