AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Fso10g02387 ATGGCAGTCAAGGCCGCGATTCACTTCTCCGACGTACCGCATTTGGATCACGTCAACGACGCCGCCGCGTCGCTGTCGCTCTACGCCACCCGTCTCCCCACCGGTTTGGATGTGAGTAATGGCCCGAAAGTTTTGCCCAAATTCATGGTGGTCGGTCACCGGGGCCATGGGATGAACATCTTACTGTCGAATGATAAGAGGATGAAGGTGTATAAGGAGAATTCGATTCTTTCGTTCAACAACGCCGCTAATCATCCTCTCGATTACATTGAATTTGATGTTCAGGTGACAAAAGACGACACACCAGTCATCTTTCACGACAATTTCATCCTCTCTGAAGAGAATGGTAACATAGTTGAAAAACGAGTCACCGATTTGACTTTGGATGAGTTCTTCAGTTATGGTCCTCAACGCGAAACAGGTCGGGTGGGAAAAACATTGCTGAGAAGATCAAACGGAAAGATTGTCGGGTGGGACGTTGAGATCGATGATCATTCTTGCACTCTTGAAGAAGCATTCCAGAAAGTGAACCCTTGTTTGGGATTTAACATTGAGTTGAAATTTGATGATTACATTGTTTATGAAGAAGAGTATCTCATTCATGTTCTTCAAGTTATCTTAAAGGTGGTATATGAAAACGCCCAAGAAAGACCTGTACTTTTCTCAAGCTTCCAGCCTGATGTGGCCTTGCTTATGAAGAAGCTTCAACATAAATACCCGGTGTACTTCTTGACAAACGGCGGAAATGAGATATTCGATGACGTCCGAATGAACTCGTTAGAAGAAGCGAAGAAGCTGGCCATATCGGGCGGTTTGGACGGAGTTGTTTCGGAAGTAAAGGGTATATTTAGAAACCCTTCAGTAGTAAGAGAGATCAAAGAATCAAATCTCTCCCTCCTAACTTATGGCAAACTAAATAACGTCCCAGAAGCCGTACACGTCCAATATCTTATGGGCGTCGAGGGTGTCATTGTTGATCTAGTACAAGAAATTACAAGTGCAGTTGCAGGTTTAAAAACAGGATTTGAAGGAGAGGAAGGAGGATCACAGGTGAAAGAGAACAGCGGCAAGATCGAACTGCCGTTCTTGCTGAGTTTGATTTCACAAGTAATTCAGCATTGA 1122 44.21 MAVKAAIHFSDVPHLDHVNDAAASLSLYATRLPTGLDVSNGPKVLPKFMVVGHRGHGMNILLSNDKRMKVYKENSILSFNNAANHPLDYIEFDVQVTKDDTPVIFHDNFILSEENGNIVEKRVTDLTLDEFFSYGPQRETGRVGKTLLRRSNGKIVGWDVEIDDHSCTLEEAFQKVNPCLGFNIELKFDDYIVYEEEYLIHVLQVILKVVYENAQERPVLFSSFQPDVALLMKKLQHKYPVYFLTNGGNEIFDDVRMNSLEEAKKLAISGGLDGVVSEVKGIFRNPSVVREIKESNLSLLTYGKLNNVPEAVHVQYLMGVEGVIVDLVQEITSAVAGLKTGFEGEEGGSQVKENSGKIELPFLLSLISQVIQH 373
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Fso10g02387 373 FunFam Glycerophosphodiester phosphodiesterase GDPD2 40 337 - -
Fso10g02387 373 SUPERFAMILY PLC-like phosphodiesterases 46 329 IPR017946 GO:0006629(InterPro)|GO:0008081(InterPro)
Fso10g02387 373 PANTHER GLYCEROPHOSPHORYL DIESTER PHOSPHODIESTERASE 43 338 IPR051578 GO:0046475(PANTHER)
Fso10g02387 373 ProSiteProfiles GP-PDE domain profile. 48 335 IPR030395 GO:0006629(InterPro)|GO:0008081(InterPro)
Fso10g02387 373 Gene3D Phosphatidylinositol (PI) phosphodiesterase 45 336 IPR017946 GO:0006629(InterPro)|GO:0008081(InterPro)
Fso10g02387 373 Pfam Glycerophosphoryl diester phosphodiesterase family 53 328 IPR030395 GO:0006629(InterPro)|GO:0008081(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Fso10g02387 K18696 glycerophosphodiester phosphodiesterase [EC:3.1.4.46]
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Event-related genes

Select Gene_1 Gene_2 Event_name
94547 Fso10g02387 Fso16g00658
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Fso Fso-Chr10:65890413 Fso16g00658 Fso-Chr16:8491380 dispersed
Fso Fso-Chr6:5928897 Fso10g02387 Fso-Chr10:65890413 transposed
Fso Fso-Chr10:65890413 Fso18g02358 Fso-Chr18:70572320 wgd