AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Fso10g02388 ATGAAGTCATCATTTGGGAAGATTGGGCGTAAGTTGACGATGCAGAAGAGCGATGTCAAGGAGATGAGAGATCATCAGCCTTCCGCTCATTTAGATGAGCTTGCTCAGGCTTCGAAGGATATGGAAGATATGAAGAACTGCTATGATGGCTTATTATCTGCGGCTGCTGCAACTGCAAATAGTATATATGAATTTTCGGAATCGCTAAATGAAATGGGGAACTGTTTAATGGGGAAAACTGCTGCAGCCGCTGATGCTGAAAGTGGAAATGCATTATCAACTTTGGGGAATTTGCAATTGGAACTTCAGAAAATTGCTGATACTTATCGTTCTTATGTAGTTGTGACGATTACTAACCCAGCAGATTCTCTTCTCAGTGAGCTACTAAAAGTGGAGGAGATGAAACTTCAGTGTGATGAGAAAAGAGAGGTGTATGATCACTTGATGGCTCAACATAGAGAGAAGGGAAGACTGAAGAATGGTAAAATAGAAAGTTCAATTGCACAAAAACTGAAAGAAGCTCAAGATGAATATGATGAAGTGGCTAGACTATGTGTATTTCGGGTTAAATCACTTAAGGAAGGACAATGGCGCAGTCTTTTAACACAAGCTGCTCGCCATCATGCCGCACAGGTGAATTTCTTTCGCAAAGGACTTAAAGCTGTTGAAGCAGTTGAACCTTTTATAAGAAATGTCACAGAAAAGCATCGTATTGATTGCCAACTCAGTGGATTGCCTGATCATGGTTCCCAGGAAGGTGAACCTATGAGTGGCTATGAAAGCACTGATGATGGAGGATTGAGTTTTGATTATAAACAAAAGAAACAAGGACTTGATGATGATGGCACCTCGCCAAATCCAATGGAGCTGGACCAGGTAGATGTCCCGTATTTTCAAGCTTCAAATCTAGAAGATTCACAGATAAATCAGAATAAACATAAAAGCGAGCAGCTTTTTGGTAAGCAAACTAGAGTTAGCAGTTATTCGGCCCCGCTATTCCCCGACAAAAATAATGCACCTGGAAAGCTTAAAGAAACCCAACCCACACCGAAAATTCACTCTTACATACTACCTCCACCCAATGTGGATACCCGGACTCCAATTTCAAAACCTGCTACATCTTCTTATCCCCTAGTTCAAAATCTGCAACATGATGCCACATCAACTGCTGCTTTGACCTCAAAAGTCCAGTCGACGGTTAAAGACGGTAACCCTGTTAATCCATCCATCCAGTTACCCGCTCCATCTACTGGAAGATTTTCATTCTCGCAACAGGATAACCATTACAGAACCGATGGTAGTAAGTAG 1308 41.67 MKSSFGKIGRKLTMQKSDVKEMRDHQPSAHLDELAQASKDMEDMKNCYDGLLSAAAATANSIYEFSESLNEMGNCLMGKTAAAADAESGNALSTLGNLQLELQKIADTYRSYVVVTITNPADSLLSELLKVEEMKLQCDEKREVYDHLMAQHREKGRLKNGKIESSIAQKLKEAQDEYDEVARLCVFRVKSLKEGQWRSLLTQAARHHAAQVNFFRKGLKAVEAVEPFIRNVTEKHRIDCQLSGLPDHGSQEGEPMSGYESTDDGGLSFDYKQKKQGLDDDGTSPNPMELDQVDVPYFQASNLEDSQINQNKHKSEQLFGKQTRVSSYSAPLFPDKNNAPGKLKETQPTPKIHSYILPPPNVDTRTPISKPATSSYPLVQNLQHDATSTAALTSKVQSTVKDGNPVNPSIQLPAPSTGRFSFSQQDNHYRTDGSK 435
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Fso10g02388 435 CDD BAR 40 227 - -
Fso10g02388 435 MobiDBLite consensus disorder prediction 241 286 - -
Fso10g02388 435 MobiDBLite consensus disorder prediction 330 352 - -
Fso10g02388 435 Coils Coil 131 151 - -
Fso10g02388 435 PANTHER HYDROXYPROLINE-RICH GLYCOPROTEIN-LIKE 1 432 IPR037488 -
Fso10g02388 435 Gene3D Arfaptin homology (AH) domain-BAR domain 26 239 IPR027267 -
Fso10g02388 435 SUPERFAMILY BAR-IMD domain-like 32 230 IPR027267 -
Fso10g02388 435 MobiDBLite consensus disorder prediction 398 435 - -
Fso10g02388 435 Pfam BAR domain of APPL family 30 235 IPR004148 GO:0005515(InterPro)|GO:0005737(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Fso10g02388 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
94548 Fso10g02388 Fso10g02747
397972 Fso10g02388 Fso15g02832
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Fso Fso-Chr10:65898065 Fso15g02372 Fso-Chr15:71387816 dispersed
Fso Fso-Chr10:65898065 Fso10g02747 Fso-Chr10:70102570 wgd