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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Fso10g02391 ATGTCATCTCTCTGTGATTTCTGCAACCAGAGATCCGCAGTGTTGTACTGTAAAGCCGATTCAGCTAAGCTCTGTTTGCTCTGCGACAACGCCGTACACTCCGCTAACGCTCTCTCTCTCAAGCATCTCCGGTCTCAGATCTGCGACAACTGCGGTTCCGATGGCGTCTCCGTCGTCTGTTCCACCGAGAACCTCCTCCTCTGCACCGGTTGCGACCACGATTTCCACGGTGACTCGTCGGTTTCCTCCTTCCACAATCGCTTCCCCGTCGATGAGATCACCGGTTGCCCTTCTGTTTATGAACTCGCTTCAGTTTGGGGGTTTAGTCTGAAGCCTTCGGTTTCGGACGGTAATTCGTGTGAGAATAAGATTTCTGCTACGGATTTTCGGGGTTTAACGACGAGACGTGATGAAAGTAGTTGCTATGATGAGGTGCCTAGTGTTGAGTGGAAATCGAGAGGTTTGGGCTGTGGAGTGCGTACGAAGGTTATGTATAAGCAGTTGTTGGAGCTTGCGAAGGAACGATTTGATGGAGATGGAGGTGAATTGGGGCCTCAAACTCCGAGTGGATGTGGTCAGAAGGAGATATCAGAAGGTTTTGAGTTTGAGGAGCAAGAGGAGCAGGATTTGTTGAATCAGCAAACTCCTTTGACGTATTTGCTCTTGCCGCCCCAGAATTCGTCGAATTCTAAAGCGAATAATATCACTGAATTTAGTAACATGTGGAGCTATAGCCCTAAACGCCAAACAAGTCAGATATGGGATTTCAGTCTAGGAAGATCAAGATCTTCTGAGACAAGATGTGATAATCTTAGTTTTGCAATAAACAACTGTACTGACCTTGTTGAGGATGCTTCTTTCACAACAATGGAAGTGTTAAAAGAAATGGATGCTATAAACATACCTATCGCCACCAATCCTTCACAAAATATATCTGGTTGCAGATCAACAATGGAGAGTGACAACAGACAAATTACTGGACCATCATCAGAAGCAAAAATGATGGAATTTAATGGATGTGATTCAATCATGGATGGTCAGATGATAGACGGGCTTTTAATGACTAGTCAAGGATTAGAATTACCAGCAACAACCAAAGTGGATGCTCAGCAGTTTGCACAGAACAGATGCAATGCAATGTTACGTTACAAGGAGAAGAAGAAAACAAGAAGGTACGACAAGTGCATCCGATACGAGTCACGAAAGGCAAGAGCTGATACCAGAAAACGAGTAAAGGGCCGGTTTGTGAAGACAATCCAATGA 1263 45.13 MSSLCDFCNQRSAVLYCKADSAKLCLLCDNAVHSANALSLKHLRSQICDNCGSDGVSVVCSTENLLLCTGCDHDFHGDSSVSSFHNRFPVDEITGCPSVYELASVWGFSLKPSVSDGNSCENKISATDFRGLTTRRDESSCYDEVPSVEWKSRGLGCGVRTKVMYKQLLELAKERFDGDGGELGPQTPSGCGQKEISEGFEFEEQEEQDLLNQQTPLTYLLLPPQNSSNSKANNITEFSNMWSYSPKRQTSQIWDFSLGRSRSSETRCDNLSFAINNCTDLVEDASFTTMEVLKEMDAINIPIATNPSQNISGCRSTMESDNRQITGPSSEAKMMEFNGCDSIMDGQMIDGLLMTSQGLELPATTKVDAQQFAQNRCNAMLRYKEKKKTRRYDKCIRYESRKARADTRKRVKGRFVKTIQ 420
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Fso10g02391 420 Pfam CCT motif 376 417 IPR010402 GO:0005515(InterPro)
Fso10g02391 420 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270(InterPro)
Fso10g02391 420 ProSiteProfiles CCT domain profile. 376 418 IPR010402 GO:0005515(InterPro)
Fso10g02391 420 ProSiteProfiles Zinc finger B-box type profile. 43 90 IPR000315 GO:0008270(InterPro)
Fso10g02391 420 CDD Bbox1-BBX-like 4 47 IPR049808 -
Fso10g02391 420 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 3 417 - -
Fso10g02391 420 SMART bboxneu5 1 47 IPR000315 GO:0008270(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Fso10g02391 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Fso Fso-Chr10:65933907 Fso14g00529 Fso-Chr14:7002211 dispersed
Fso Fso-Chr10:65933907 Fso8g02102 Fso-Chr8:51412940 wgd
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Fso2g00078 ACH 1 114 C2C2-CO-like Transcription Factor family AT1G75540 72.807 2.23e-57 180.0
Fso2g00182 . 1 67 C2C2-CO-like Transcription Factor family AT3G07650 76.119 6.36e-30 106.0
Fso3g00568 . 283 334 C2C2-CO-like Transcription Factor family AT5G57660 50.0 1.79e-11 60.8
Fso3g00605 . 1 331 C2C2-CO-like Transcription Factor family AT1G75540 43.86 2.00e-79 242.0
Fso3g01944 ACH 176 276 C2C2-CO-like Transcription Factor family AT2G24790 37.624 3.27e-11 61.6
Fso4g00390 ACH,WGDA 225 276 C2C2-CO-like Transcription Factor family AT2G24790 55.769 1.26e-12 65.1
Fso4g00879 WGDA 1 265 C2C2-CO-like Transcription Factor family AT1G78600 47.94 1.14e-74 228.0
Fso4g00897 ACH 1 373 C2C2-CO-like Transcription Factor family AT5G48250 54.156 4.94e-134 386.0
Fso5g01915 . 185 270 C2C2-CO-like Transcription Factor family AT2G24790 39.535 4.36e-11 60.1
Fso5g01971 . 190 320 C2C2-CO-like Transcription Factor family AT1G49130 34.848 1.45e-17 77.8
Fso5g02229 WGDA 8 328 C2C2-CO-like Transcription Factor family AT2G47890 44.505 1.48e-92 278.0
Fso6g01982 . 1 93 C2C2-CO-like Transcription Factor family AT5G48250 72.043 8.78e-43 141.0
Fso6g02087 . 1 204 C2C2-CO-like Transcription Factor family AT1G75540 45.536 7.62e-60 189.0
Fso7g01363 . 1 183 C2C2-CO-like Transcription Factor family AT4G38960 58.411 3.90e-80 235.0
Fso7g01474 . 3 85 C2C2-CO-like Transcription Factor family AT4G27310 57.143 1.15e-26 100.0
Fso8g00271 . 8 355 C2C2-CO-like Transcription Factor family AT5G57660 46.494 6.67e-100 299.0
Fso8g00597 ACH 1 373 C2C2-CO-like Transcription Factor family AT5G48250 56.053 1.31e-136 392.0
Fso8g01318 . 284 331 C2C2-CO-like Transcription Factor family AT5G57660 56.25 1.16e-10 59.3
Fso8g02102 WGDA 1 129 C2C2-CO-like Transcription Factor family AT2G33500 54.887 3.86e-47 156.0
Fso9g00573 . 272 319 C2C2-CO-like Transcription Factor family AT3G02380 58.333 2.71e-14 66.2
Fso10g01598 WGDA 1 112 C2C2-CO-like Transcription Factor family AT4G27310 47.788 7.43e-29 106.0
Fso10g02391 . 12 398 C2C2-CO-like Transcription Factor family AT2G33500 39.007 2.28e-78 246.0
Fso10g03010 ACH 9 347 C2C2-CO-like Transcription Factor family AT3G02380 50.0 1.91e-117 343.0
Fso11g00417 ACH,WGDA 232 336 C2C2-CO-like Transcription Factor family AT5G15850 39.623 2.60e-13 68.2
Fso11g00695 . 45 406 C2C2-CO-like Transcription Factor family AT5G24930 49.105 5.73e-92 280.0
Fso11g00932 . 3 165 C2C2-CO-like Transcription Factor family AT4G27310 43.373 1.82e-33 118.0
Fso11g01039 ACH,WGDA 1 299 C2C2-CO-like Transcription Factor family AT1G78600 53.333 1.03e-96 285.0
Fso11g02295 . 268 401 C2C2-CO-like Transcription Factor family AT1G68520 38.732 4.91e-21 92.4
Fso13g00016 . 5 210 C2C2-CO-like Transcription Factor family AT3G21150 30.088 2.09e-12 62.8
Fso13g01701 . 1 372 C2C2-CO-like Transcription Factor family AT3G07650 54.617 1.11e-132 382.0
Fso13g01754 ACH 1 196 C2C2-CO-like Transcription Factor family AT1G75540 48.469 1.03e-55 179.0
Fso14g00395 . 10 355 C2C2-CO-like Transcription Factor family AT1G68190 34.465 3.89e-56 186.0
Fso14g00525 WGDA 12 253 C2C2-CO-like Transcription Factor family AT2G33500 39.362 9.72e-55 182.0
Fso14g00526 . 361 401 C2C2-CO-like Transcription Factor family AT2G33500 82.927 6.64e-17 69.3
Fso14g02434 WGDA 8 328 C2C2-CO-like Transcription Factor family AT2G47890 44.624 7.21e-94 282.0
Fso15g01732 . 289 400 C2C2-CO-like Transcription Factor family AT1G68520 42.553 4.61e-20 88.2
Fso15g02543 WGDA 3 199 C2C2-CO-like Transcription Factor family AT5G54470 41.784 4.42e-32 115.0
Fso16g00115 . 237 332 C2C2-CO-like Transcription Factor family AT5G15850 36.634 1.14e-09 56.6
Fso18g01261 . 245 386 C2C2-CO-like Transcription Factor family AT5G24930 32.45 8.51e-13 67.4
Fso18g02186 ACH 9 347 C2C2-CO-like Transcription Factor family AT3G02380 51.706 1.73e-121 353.0
Fso10000910.1g00006 . 1 299 C2C2-CO-like Transcription Factor family AT1G78600 53.333 1.03e-96 285.0
Fso10000157.1g00001 . 1 110 C2C2-CO-like Transcription Factor family AT1G75540 74.545 1.03e-57 179.0
Fso10001572.1g00002 . 245 386 C2C2-CO-like Transcription Factor family AT5G24930 32.45 8.51e-13 67.4
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Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Fso CCT 3.6e-15 CL0281 TF C2C2-CO-like