AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Fso12g01961 ATGGGGGAAACGAAATCGACATCAGAGAACAGGTTGAAGCCATCGACGAAGTGTTCTGATGAGAATCAGGTGCCGTTGAAGTGTAGAAACAACAATGTGCAATCGAATTTGAAGCCCAGATCGATTTGGGGCTCGAATATTGTTAAAGGGTTTTCGGGTGATAAGAAAACAAGATCCCAACAAGTGGTGAAGAAATCTCAACAGCAACCTGTTACAACAGTGTCCAACTCGAATTCAAGAAACCCCTTTGGTTCTAATCGAGCGAAACGGTCTCTTATCGGAGATTTATCGTGTTCTGTCACTGCTACACAGGTTCATCCTCAAGGGGTTCATCATCACTGTGAACAGAACCAGAGGTTGTATAAGTCATCGTCTTCTTCGGGCTCTCGTGATCTGTTTGCTGAGCTTGATCAACTCAGAAGCTTGCTTCAAGAGTCTAAAGATAGAGAAGCTAAGTTGCAAGCTGAGTTGTGTGATTTCAAGAAGAAAAATCTTCAGGCTTTGGAGCTTGAAAGGATAGTTGAGTCGAAGACTAGTGAAATCGAATCTCTTAAAAGCAAGATTGATTTGCTCGAATCGGAGAACACTAGTCTTTCTGAGCAGTTGAATTGTCAGCAGGTGCAAGAAAATATAAAAAAAGGGGTTGTTAATAATAGTGTTGAGGTAGATGTTCTTAAGTTGAGGAGGTTGAATGCTGAGCTTCATCTTCAAAAGAGAAATCTTTGTTGCAGAATTTCTTCAATGGAGTCAGAACTAGCTGCCATTGCTAAAGATTCTGAGAATGAATTTGTTAAGAAGATAAAAGCTGAGGCGTCTATGTTAAGACAAACAAATGAAGATTTATGTAAACAAGTTGAAGATCTACAAGTAAGTCGATTAAACGAAGTTGAGGAGCTTGTTTATCTTAGATGGGTCAATTCCTGTCTTAAAAATGAGTTGCAAAATTCGGCGTTTGTGGCTTCTGAGATAACATCAAGTCCAGCTTCTGTCGGATGGCTCAATGGTTCTATGTCAAGTGATGAAAGTTCTGAACATGGTAGTACCCAAAAGAAGCTAAGTTTGATCAAGAAAATGAAAAAATGGCCTGTTCTTGATGAAGAAACAAACGCCTCTGAACCGATGAATTATAAATTGAATCTTGGTTGGTCAGAAGGAAGAAGGCATTCTATCAGTGGAGCAAATTGCTGTCAGGAAGATTTGGTGGTGAATAAAAGAAGACAATCTGATGGTTTTATATGTTCAATGGAGATGGAGGGTGTAAATGATTTGAATGTGATCCAAGGGTCACAATTGCGTGAAGCTACGAAACTGAAAACATTTTTGGATGTGGAAAAGAGGGCGTTGCGTGTTCCTAATCCCCCTCCGAGGCCTTCTAGCTTTACTTCTAAGGAACATACAGAGGTTACTAGTCGAGTGTCACCGCCACCTCCACCACCACCACCACCTCCGCCGCCACCACCTCCAAAATTCAGGGGAAGAAACAATGGTGGAGGGGTTGTTCAAAGAGCTCCAGAAGTTGTTGAGTTTTATCATTCTCTTATGAAAAGAGATTCCAGGAAAGATTCACTAAATGATGGGATTTGTGATGCCTTAGATGTCAATAATGTCCGAACTAGTATGATTGGTGAAATTGAAAACCGGTCATCACATTTGCTTGCTATAAAGGAGGATGTTGAGACTCAAGGGGAATTTGTGAATTCTTTAATACGCGAGGTCAACAATGCTGTTTATCCGGATATAGAAGATGTGGTGGCTTTTGTGAACTGGCTGGATGATGAACTCGGCTTTCTTGTGGATGAGAGAGCTGTGCTGAAACACTTTGATTGGCCGGAGAAGAAAGCCGATACACTAAGAGAGGCAGCATTTGCGTATCGTGATCTAACGAAGCTAGAGCATGAAATTTCAAACTACAAGGACAATTTCCACATACCCTGTGACTTGGCATTGAAGAAAATGGTTTCCTTGTCTGAAAAAATGGAGCGTATCGTTAATAACCTTCTTAGAACAAGAGATCTGTTGATGCGTAATTGCAAAGAGTTCCATATTCCTGCAGATTGGATGCTTGATTCGGGAATATTAAACAAGATTAAGCTGGGGTCGGTTAAGTTGGCAAAGAAATACTTGAGAAGAGTTGCTACAGAACTTCAAACGAAGGGAATGTCGGAGAAAGATCCATCAATGGACTATATGCTACTTCAAGGAGTGCGATTTGCTTTCCGCATTCATCAGTTTGCTGGTGGATTTGATGTCGATACAATGCATGCATTCGAAGAGCTTCGCAACGTAGCTCTTGTTTTGAACAAAAAATAG 2310 40.87 MGETKSTSENRLKPSTKCSDENQVPLKCRNNNVQSNLKPRSIWGSNIVKGFSGDKKTRSQQVVKKSQQQPVTTVSNSNSRNPFGSNRAKRSLIGDLSCSVTATQVHPQGVHHHCEQNQRLYKSSSSSGSRDLFAELDQLRSLLQESKDREAKLQAELCDFKKKNLQALELERIVESKTSEIESLKSKIDLLESENTSLSEQLNCQQVQENIKKGVVNNSVEVDVLKLRRLNAELHLQKRNLCCRISSMESELAAIAKDSENEFVKKIKAEASMLRQTNEDLCKQVEDLQVSRLNEVEELVYLRWVNSCLKNELQNSAFVASEITSSPASVGWLNGSMSSDESSEHGSTQKKLSLIKKMKKWPVLDEETNASEPMNYKLNLGWSEGRRHSISGANCCQEDLVVNKRRQSDGFICSMEMEGVNDLNVIQGSQLREATKLKTFLDVEKRALRVPNPPPRPSSFTSKEHTEVTSRVSPPPPPPPPPPPPPPPKFRGRNNGGGVVQRAPEVVEFYHSLMKRDSRKDSLNDGICDALDVNNVRTSMIGEIENRSSHLLAIKEDVETQGEFVNSLIREVNNAVYPDIEDVVAFVNWLDDELGFLVDERAVLKHFDWPEKKADTLREAAFAYRDLTKLEHEISNYKDNFHIPCDLALKKMVSLSEKMERIVNNLLRTRDLLMRNCKEFHIPADWMLDSGILNKIKLGSVKLAKKYLRRVATELQTKGMSEKDPSMDYMLLQGVRFAFRIHQFAGGFDVDTMHAFEELRNVALVLNKK 769
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Fso12g01961 769 MobiDBLite consensus disorder prediction 52 86 - -
Fso12g01961 769 MobiDBLite consensus disorder prediction 448 498 - -
Fso12g01961 769 MobiDBLite consensus disorder prediction 7 23 - -
Fso12g01961 769 Coils Coil 167 208 - -
Fso12g01961 769 MobiDBLite consensus disorder prediction 47 88 - -
Fso12g01961 769 Coils Coil 264 284 - -
Fso12g01961 769 Coils Coil 620 640 - -
Fso12g01961 769 SUPERFAMILY Formin homology 2 domain (FH2 domain) 477 629 - -
Fso12g01961 769 MobiDBLite consensus disorder prediction 1 23 - -
Fso12g01961 769 Coils Coil 129 156 - -
Fso12g01961 769 PANTHER PROTEIN CHUP1, CHLOROPLASTIC 65 761 IPR040265 GO:0009658(PANTHER)|GO:0009707(PANTHER)
Fso12g01961 769 MobiDBLite consensus disorder prediction 471 491 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Fso12g01961 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Fso Fso-Chr12:58153346 Fso8g01903 Fso-Chr8:48532739 dispersed
Fso Fso-Chr12:58153346 Fso7g00820 Fso-Chr7:10333828 transposed
Fso Fso-Chr12:58153346 Fso12g00676 Fso-Chr12:10814145 transposed