AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Fso14g00466 ATGGCTCTTTTGGAATCAAACAAAAACAGAGGAGAGGTGAGGATTCATGAAAATTTAGATGATCTGAGCACGAATTTGGCTGATTATATAGCTGAATTATCCGAGGCATCGGTTAAAGAACGTGGCTTTTTTGCCATTGCTTTATCTGGTGGTTCCATCATTAGCTTGATGAGGAATCTATGTGGAGCTCCTTATAACAAGACTGTTGATTGGTCAAAATGGTATATATTTTGGGCAGATGAACGAGTGGTTGCCAAGACTCATGTCGATAGCAACTATAAGCTTGCTAAAGATCATCTTTTGTCTAAGTTGCCTATTGTTCCTAGTCATGTACATTCCATCAATGATTCCCTCACCGCAGAAGAAGCTGCAAATGAATACGAGTATGTAATCAGGCAACTGGTCAGAACCCGTGTGGTCAACGTGTCAGAGGTTAGCGACTGCCCGAAGTTTGACCTGATCCTTCTAGGGATGGGCCCAGATGGCCATGTGGCGTCTTTGTTTCCAAATCATTCGGTTCTTGAAGAAAAGAATGAATGGGTGACATTTATCACCACTTCCCCTAAGCCTCCACCAGAAAGGATCACCTTCACACTGCCTGTTATCAACTCTGCTGCCAATGTGGCGGTGGTGGTGACAGGTGGCGAGAAAGCGGAAGCTTCCCAGCTGGCGATAGATGACATGGGACCCGAGGGTCCGGTGTTGCCAGCTAGGATGATTGAACCAGCTGTAGGGAAATTGGTGTGGTTTTTGGATAAACAGGCTGCTGCAAAGCTCAAGGGCTTTTCTCAATTTTCTAAGTAG 804 45.15 MALLESNKNRGEVRIHENLDDLSTNLADYIAELSEASVKERGFFAIALSGGSIISLMRNLCGAPYNKTVDWSKWYIFWADERVVAKTHVDSNYKLAKDHLLSKLPIVPSHVHSINDSLTAEEAANEYEYVIRQLVRTRVVNVSEVSDCPKFDLILLGMGPDGHVASLFPNHSVLEEKNEWVTFITTSPKPPPERITFTLPVINSAANVAVVVTGGEKAEASQLAIDDMGPEGPVLPARMIEPAVGKLVWFLDKQAAAKLKGFSQFSK 267
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Fso14g00466 267 CDD 6PGL 20 251 IPR005900 GO:0005975(InterPro)|GO:0006098(InterPro)|GO:0017057(InterPro)
Fso14g00466 267 PANTHER 6-PHOSPHOGLUCONOLACTONASE 5 260 IPR039104 -
Fso14g00466 267 Gene3D - 8 262 - -
Fso14g00466 267 Pfam Glucosamine-6-phosphate isomerases-6-phosphogluconolactonase 19 249 IPR006148 GO:0005975(InterPro)
Fso14g00466 267 NCBIfam 6-phosphogluconolactonase 15 259 IPR005900 GO:0005975(InterPro)|GO:0006098(InterPro)|GO:0017057(InterPro)
Fso14g00466 267 FunFam Probable 6-phosphogluconolactonase 8 260 - -
Fso14g00466 267 SUPERFAMILY NagB-RpiA-CoA transferase-like 13 260 IPR037171 -
Fso14g00466 267 Coils Coil 19 39 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Fso14g00466 K01057 6-phosphogluconolactonase [EC:3.1.1.31]
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Event-related genes

Select Gene_1 Gene_2 Event_name
95224 Fso12g00149 Fso14g00466
399041 Fso14g00466 Fso8g02029
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
2592982 Fso Fso13g00296 Fso-Chr13:7702164 Fso14g00466 Fso-Chr14:6282008
2595082 Fso Fso14g00466 Fso-Chr14:6282008 Fso8g01286 Fso-Chr8:35388743
2699024 Fso Fso12g00149 Fso-Chr12:2338045 Fso14g00466 Fso-Chr14:6282008
2735007 Fso Fso14g00466 Fso-Chr14:6282008 Fso8g02029 Fso-Chr8:50604272