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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Fso17g00998 ATGGCTTTGGTTTTTGACCATCTGCCAGAACTTGATTTATCAGATTTCAGCACCACCACCACTGAGAGCACCACGACGCCGGAACATGATCATTGTCGTGACTTCGGTGACTGGTCTCCGGTGGTTGATTGGGATTCGCTTCCCGTTCATCACCTAGAAAACTTCCATGACCTTTTCGAGTTTGAAACTGACGAAGACAAAGATCACAATATTTCCTACTTGGACCACAATAACAATTATGAGCCACCTAGTACATTGACGGTGGAACCACCGGTATCAGGCTTTTTTTACGACTTAAAAGGGCTAAGATTGGTCCACTTACTTATGGCTGCGGCAGAGGCGATGACAAGTCACGCCAAAAGCCATGATCTTGCTCACGTGATACTGGTTCTGCTCAAGGACTTGGTGTCCCCAAATGAGGGCACTAATATGGAAAGGCTCGCGGCTCATTTCACCAATGCCTTACTTAACTTATTGGAAAGTGCTGATGGTGGTGTTGGAGGGATGCTTTATAAACCCCTCCAACACCAACACCATACTGACATCCTGTCAGCTTTCCAGGTTTTACAGGACATGTCACCATATATAAAATTCGGGCATTTCACTGCGAACCAAGCGATCATCGAAGCAGTCACTCATGAAAGACGCGTTCACATAATCGATTACGATATCATGGAAGGTATCCAATGGGCATCACTAATGCAAGCATTGACCTCCCGGAAAGACGGACACCCCCCACCCTTCCTCCGCATCACCGCCATATCACGCCCGGGAACCGGCCCAAAACCCATATCTACCGTACAGAGAACCGGTCGTCTTTTAACATCTTTCGCAGATTCCATCCACCAACCATTTTCTTTCCACCAATGCAAACTAGACCCCGATGAAACCTTCAAGCCATCATCTCTAAAACTAGTAAGAGGAGAAGCCATCATAGTTAACTGTATGTTACATCTCCCTCACTTCACCTACCGATCGTCATCTTCGGTCTCTTCGTTCCTCACGGGATCCAAGGCTTTAAACCCGAAGCTCGTGACCCTAGTCGAAGAAGAGGGACCAAAAGTCGAAGGCGGGTTCGTGGGCCGGTTCATGGACACATTGCATCGGTACTCGGCCGTGTTCGACTCGTTGGAAGCCGGGTTTCCGATGCAGGGGCGGGCCCGGGCGTTGGTGGAACGGGTGATCCTGGGCCCGCGGATCATGGGTTCGGTGGGTCGGGTGTATAGGGAAGAGGGAGAGGGTGCGTGTGGCTCGTGGGGTGATTCGTTGACGGGTGAACCGGGGTTCCACCCGGTTGATATAAGCTTTGCAAATAAGTGTCAAGCGAAACTGTTGTTGGGGTTGTTTAATGATGGGTATAGAGTGGAGGAATATGCGAGTAATAAGCTTGTCTTAGGGTGGAAGTCTCGTAGGTTGCTTTCTGCTTCAATTTGGGCATGCTGTGAACATGATTGA 1455 49.35 MALVFDHLPELDLSDFSTTTTESTTTPEHDHCRDFGDWSPVVDWDSLPVHHLENFHDLFEFETDEDKDHNISYLDHNNNYEPPSTLTVEPPVSGFFYDLKGLRLVHLLMAAAEAMTSHAKSHDLAHVILVLLKDLVSPNEGTNMERLAAHFTNALLNLLESADGGVGGMLYKPLQHQHHTDILSAFQVLQDMSPYIKFGHFTANQAIIEAVTHERRVHIIDYDIMEGIQWASLMQALTSRKDGHPPPFLRITAISRPGTGPKPISTVQRTGRLLTSFADSIHQPFSFHQCKLDPDETFKPSSLKLVRGEAIIVNCMLHLPHFTYRSSSSVSSFLTGSKALNPKLVTLVEEEGPKVEGGFVGRFMDTLHRYSAVFDSLEAGFPMQGRARALVERVILGPRIMGSVGRVYREEGEGACGSWGDSLTGEPGFHPVDISFANKCQAKLLLGLFNDGYRVEEYASNKLVLGWKSRRLLSASIWACCEHD 484
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Fso17g00998 484 Pfam GRAS domain family 104 478 IPR005202 -
Fso17g00998 484 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 79 478 IPR005202 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
Fso17g00998 484 ProSiteProfiles GRAS family profile. 95 479 IPR005202 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Fso17g00998 K27745 protein nodulation signaling pathway 2
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Fso Fso-Chr17:35698477 Fso1g02051 Fso-Chr1:59837549 dispersed
Fso Fso-Chr17:35698477 Fso10g01441 Fso-Chr10:50291496 transposed
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Fso1g01072 . 7 482 GRAS Transcription Factor family AT1G50420 59.664 0.0 571.0
Fso1g02051 . 241 651 GRAS Transcription Factor family AT3G54220 80.825 0.0 663.0
Fso1g02346 . 31 103 GRAS Transcription Factor family AT5G41920 41.892 1.19e-13 66.6
Fso1g02350 . 282 650 GRAS Transcription Factor family AT3G54220 54.839 2.00e-141 419.0
Fso1g02590 . 585 695 GRAS Transcription Factor family AT1G07520 63.063 3.80e-45 152.0
Fso1g02591 ACH 20 613 GRAS Transcription Factor family AT1G07530 46.141 2.89e-149 447.0
Fso2g00125 . 67 490 GRAS Transcription Factor family AT5G48150 62.617 0.0 546.0
Fso2g00381 . 39 489 GRAS Transcription Factor family AT5G48150 53.763 1.03e-173 497.0
Fso2g00463 . 147 506 GRAS Transcription Factor family AT1G66350 35.204 4.89e-62 209.0
Fso2g02443 . 73 713 GRAS Transcription Factor family AT2G37650 54.135 0.0 665.0
Fso2g03144 . 204 555 GRAS Transcription Factor family AT4G00150 60.976 1.16e-147 439.0
Fso3g00351 . 167 529 GRAS Transcription Factor family AT1G14920 34.872 3.96e-67 224.0
Fso3g01898 . 1 657 GRAS Transcription Factor family AT1G63100 48.301 0.0 543.0
Fso3g02007 WGDA 180 555 GRAS Transcription Factor family AT4G00150 46.582 6.97e-106 328.0
Fso3g02059 WGDA 170 546 GRAS Transcription Factor family AT3G03450 30.256 1.19e-53 189.0
Fso4g00276 WGDA 132 530 GRAS Transcription Factor family AT4G37650 52.871 2.48e-141 412.0
Fso5g01862 . 45 581 GRAS Transcription Factor family AT3G46600 44.784 2.86e-158 466.0
Fso5g01864 . 295 764 GRAS Transcription Factor family AT1G07530 49.686 7.06e-165 487.0
Fso5g01865 . 20 766 GRAS Transcription Factor family AT1G07530 47.375 0.0 618.0
Fso5g02408 . 231 515 GRAS Transcription Factor family AT5G17490 26.316 3.59e-19 87.8
Fso5g02410 WGDA 168 544 GRAS Transcription Factor family AT3G03450 26.718 4.93e-24 103.0
Fso6g00960 ACH 25 767 GRAS Transcription Factor family AT1G07530 46.631 0.0 612.0
Fso6g01771 . 35 489 GRAS Transcription Factor family AT5G48150 53.571 7.93e-175 500.0
Fso8g01989 . 26 581 GRAS Transcription Factor family AT2G01570 61.014 0.0 668.0
Fso9g00183 . 40 444 GRAS Transcription Factor family AT1G55580 47.281 6.72e-114 339.0
Fso9g00302 . 41 490 GRAS Transcription Factor family AT5G48150 65.721 0.0 612.0
Fso9g01331 . 1 653 GRAS Transcription Factor family AT1G63100 49.104 0.0 548.0
Fso9g01402 WGDA 187 555 GRAS Transcription Factor family AT4G00150 46.392 7.57e-103 314.0
Fso9g01445 WGDA 178 546 GRAS Transcription Factor family AT3G03450 30.0 1.99e-51 182.0
Fso9g01446 . 170 547 GRAS Transcription Factor family AT3G03450 28.351 1.00e-52 186.0
Fso10g01441 . 177 544 GRAS Transcription Factor family AT3G03450 34.257 5.03e-55 191.0
Fso10g02025 . 1 529 GRAS Transcription Factor family AT4G37650 57.38 0.0 551.0
Fso10g02751 . 144 507 GRAS Transcription Factor family AT1G66350 44.211 4.26e-100 310.0
Fso10g03296 ACH 37 484 GRAS Transcription Factor family AT4G36710 47.939 1.25e-131 389.0
Fso10g03801 . 165 529 GRAS Transcription Factor family AT1G14920 35.233 7.00e-70 232.0
Fso10g04079 ACH 9 510 GRAS Transcription Factor family AT3G13840 45.905 3.93e-142 418.0
Fso11g00067 . 167 554 GRAS Transcription Factor family AT4G00150 52.135 6.76e-138 415.0
Fso11g00244 WGDA 137 530 GRAS Transcription Factor family AT4G37650 51.98 5.62e-135 396.0
Fso11g00817 . 40 444 GRAS Transcription Factor family AT1G55580 47.529 3.14e-117 349.0
Fso12g00170 . 19 530 GRAS Transcription Factor family AT1G14920 62.094 0.0 671.0
Fso12g00962 . 1 525 GRAS Transcription Factor family AT4G17230 54.775 0.0 555.0
Fso12g01837 . 15 767 GRAS Transcription Factor family AT1G07530 47.396 0.0 644.0
Fso12g01898 . 103 188 GRAS Transcription Factor family AT3G54220 58.14 6.14e-22 93.6
Fso12g01969 . 4 482 GRAS Transcription Factor family AT1G50420 58.385 0.0 550.0
Fso13g00189 . 33 639 GRAS Transcription Factor family AT5G52510 43.987 4.12e-132 400.0
Fso13g01649 . 178 547 GRAS Transcription Factor family AT3G03450 29.427 2.61e-56 192.0
Fso13g01650 . 150 507 GRAS Transcription Factor family AT1G66350 30.688 1.95e-56 195.0
Fso13g01651 . 150 507 GRAS Transcription Factor family AT1G66350 30.159 2.39e-56 194.0
Fso13g01714 . 34 291 GRAS Transcription Factor family AT5G48150 59.316 4.98e-98 296.0
Fso13g01715 . 330 489 GRAS Transcription Factor family AT5G48150 76.25 2.33e-91 272.0
Fso13g01950 ACH 118 510 GRAS Transcription Factor family AT3G13840 52.567 6.80e-144 417.0
Fso14g00438 . 18 530 GRAS Transcription Factor family AT1G14920 61.163 0.0 648.0
Fso14g00759 . 382 714 GRAS Transcription Factor family AT2G37650 58.806 1.06e-143 421.0
Fso14g00761 . 243 714 GRAS Transcription Factor family AT2G37650 53.125 1.44e-166 495.0
Fso14g01456 . 121 593 GRAS Transcription Factor family AT1G21450 62.156 0.0 585.0
Fso14g01455 . 121 593 GRAS Transcription Factor family AT1G21450 62.156 0.0 585.0
Fso14g01477 . 139 519 GRAS Transcription Factor family AT5G17490 33.012 2.26e-51 180.0
Fso14g01933 . 86 767 GRAS Transcription Factor family AT1G07530 46.209 0.0 556.0
Fso14g02556 WGDA 156 517 GRAS Transcription Factor family AT5G17490 24.87 4.42e-21 94.4
Fso15g01268 . 1 584 GRAS Transcription Factor family AT5G66770 57.877 0.0 595.0
Fso15g01421 . 272 448 GRAS Transcription Factor family AT1G07530 39.344 3.26e-26 109.0
Fso15g01460 . 12 409 GRAS Transcription Factor family AT3G49950 60.911 0.0 518.0
Fso16g00137 . 35 640 GRAS Transcription Factor family AT5G52510 38.969 8.76e-118 362.0
Fso16g00328 . 86 767 GRAS Transcription Factor family AT1G07530 46.532 0.0 568.0
Fso16g00958 ACH,WGDA 37 486 GRAS Transcription Factor family AT4G36710 47.034 2.85e-135 400.0
Fso16g01647 . 4 482 GRAS Transcription Factor family AT1G50420 62.63 0.0 615.0
Fso17g00309 . 139 519 GRAS Transcription Factor family AT5G17490 33.012 2.26e-51 180.0
Fso17g00998 . 37 405 GRAS Transcription Factor family AT5G41920 35.878 2.66e-55 188.0
Fso17g01695 . 165 529 GRAS Transcription Factor family AT1G14920 34.103 5.42e-69 230.0
Fso18g00403 . 1 407 GRAS Transcription Factor family AT3G49950 44.787 2.09e-120 355.0
Fso18g01822 . 1 545 GRAS Transcription Factor family AT3G03450 61.404 0.0 675.0
Fso18g02028 ACH,WGDA 37 486 GRAS Transcription Factor family AT4G36710 48.69 1.18e-136 402.0
Fso18g02805 . 86 767 GRAS Transcription Factor family AT1G07530 44.783 0.0 545.0
Fso10000622.1g00001 . 26 60 GRAS Transcription Factor family AT1G66350 71.429 3.69e-10 52.8
Fso10000165.1g00002 . 37 490 GRAS Transcription Factor family AT5G48150 62.554 0.0 580.0
Fso10001060.1g00001 . 157 299 GRAS Transcription Factor family AT1G66350 26.923 1.65e-13 65.1
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Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Fso GRAS 6.8e-100 CL0063 TF GRAS