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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Fso1g01973 ATGGGCAATTACAGGCTCAGATTATCAACTCTAATCCCCAATTCATGGATCTACACCTCCATCACGGGCACCAAACTCAAGAACAAACTAACCAAAACCCAACCCATAACAACTTCATCATCTTCACCCTCGTCTTCTTCATCGTTTTCCGCATCAAAATCTGCAATTGATCAAAGAAAATCATACTACTTCACCAGAGACCTCATCGTGCCCGACCCGATTACCCGTAATCAGAACCTATCACCACTTAAAACCGATCACCAACCCGACCCGAGACGAAAATCATCCAAGAAAAAACGACCCATCACCCCAAAGAAACCAATTCGCCTGAAATCGGTGTCGCCGGAGCTCAACCCCGCCGGAAAATGCAGCTGCCGGAGTCCCACCGAACAATCTCTCATTTCCCCAAAAGACGACGTTTATACGAAAGTTAACCTCGCACCGATCATAACCAAACCCACGAAGCCAAACGAATTCGGGCCGGGTAAATGGGTGGTCGCCGGAGATCGCCGGAGTTCAACGGCTAACGACGGCGTAACTCAGAGTCCGGCGAGAAAAGCTAAGAACAACAGTTATTCTCCGAGGTTGGGGAACAGGGTGAGGATCAACGGGATAAACGCCAGTGGCCGGAGAAGATCCGGCGACCGGCGGAGCTTGTCGGAAAGTATGGTGGTGGTGAAGACGACGGTGGATCCGTTTAGGGATTTTAAAGAGTCGATGGTGGAGATGATAATGGGGCATAATATTACGAGTTCTAAAGATTTGGAAGATCTTCTTGCATGTTATTTATCATTGAATTCTGATGAATATCATGATTTGATCATCAAGGTATTTAAGGAAATATGGTTTGAGTGTACTGATGTTAGACTGTAG 873 46.85 MGNYRLRLSTLIPNSWIYTSITGTKLKNKLTKTQPITTSSSSPSSSSSFSASKSAIDQRKSYYFTRDLIVPDPITRNQNLSPLKTDHQPDPRRKSSKKKRPITPKKPIRLKSVSPELNPAGKCSCRSPTEQSLISPKDDVYTKVNLAPIITKPTKPNEFGPGKWVVAGDRRSSTANDGVTQSPARKAKNNSYSPRLGNRVRINGINASGRRRSGDRRSLSESMVVVKTTVDPFRDFKESMVEMIMGHNITSSKDLEDLLACYLSLNSDEYHDLIIKVFKEIWFECTDVRL 290
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Fso1g01973 290 MobiDBLite consensus disorder prediction 168 193 - -
Fso1g01973 290 ProSiteProfiles OVATE domain profile. 225 284 IPR006458 -
Fso1g01973 290 MobiDBLite consensus disorder prediction 173 193 - -
Fso1g01973 290 Pfam Transcriptional repressor, ovate 230 284 IPR006458 -
Fso1g01973 290 NCBIfam uncharacterized plant-specific domain TIGR01568 223 284 IPR006458 -
Fso1g01973 290 Pfam DNA-binding domain 1 48 IPR025830 GO:0003677(InterPro)
Fso1g01973 290 PANTHER TRANSCRIPTION REPRESSOR OFP7-RELATED 45 285 IPR038933 GO:0045892(InterPro)
Fso1g01973 290 MobiDBLite consensus disorder prediction 29 51 - -
Fso1g01973 290 MobiDBLite consensus disorder prediction 73 132 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Fso1g01973 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
96138 Fso1g01973 Fso5g02360
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
2606352 Fso Fso1g01973 Fso-Chr1:58178732 Fso5g01990 Fso-Chr5:59507206
2628230 Fso Fso1g01973 Fso-Chr1:58178732 Fso14g02124 Fso-Chr14:51669956
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Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Fso Ovate 1.3e-22 No_clan TF OFP