AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Fso1g02005 ATGGCTACTTTCATAGCATTCAAGTTGTCATCTTTCTCATCCAGTGTTCCACCAACGCCTGCACGTTCTTCAATTTCATTTTCTTCAAGAAAATTCTTTCTTCCAGTCAAGTTTCCTCCCCGCCGATCTACATTCCCAAGAATTTATGCGTTTTCTAGTAATGATATCAAGGTGGGTTCCAACATTGAGGTAGATGGAGCTCCTTGGAAGGTTCTAGAGTTCCTTCATGTTAAGCCTGGTAAAGGGGCTGCTTATGTGAGGACTACACTACGTAATCATATAACAGGAAACACTGTTGAGAAAACTTTCCGAGCTGGAAGCAAGATTGAACAAGCTGAGATATCTAAGGAGACGAAACAATTCACATACAAGGATGGTTCACAGTTTGTTTTCATGGATCTGACTTCATACGAGGAAGTTCGTCTTAACGAGTCAGATATGGGAGATAAGACGAAATGGCTAAAAGAAGGCATGGATTGTAACTTGCTATTTTGGAAGGGAAAGGTTATCGATTTTGAGCTCCCAATACAGGTTAAAGTGAAAATAGTTGATGTTGATCCTGGTGTGAAAGGTGACGCGGCTCAAGGTGGATCAAAACCAGCCACTGTGGAAACCGGTGCTGTTGTTTATGTTCCTTTGTTTGTAGATAGAGATCAAGAAATAATTGTTGATACAAGAACAGGGCAGTACGTGAGTCGTGTATGA 705 41.13 MATFIAFKLSSFSSSVPPTPARSSISFSSRKFFLPVKFPPRRSTFPRIYAFSSNDIKVGSNIEVDGAPWKVLEFLHVKPGKGAAYVRTTLRNHITGNTVEKTFRAGSKIEQAEISKETKQFTYKDGSQFVFMDLTSYEEVRLNESDMGDKTKWLKEGMDCNLLFWKGKVIDFELPIQVKVKIVDVDPGVKGDAAQGGSKPATVETGAVVYVPLFVDRDQEIIVDTRTGQYVSRV 234
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Fso1g02005 234 Gene3D - 113 175 IPR012340 -
Fso1g02005 234 FunFam Organellar elongation factor P 44 112 - -
Fso1g02005 234 Hamap Elongation factor P [efp]. 50 234 IPR011768 GO:0003746(InterPro)|GO:0005737(InterPro)|GO:0006414(InterPro)
Fso1g02005 234 FunFam Elongation factor P 113 176 - -
Fso1g02005 234 SMART EFP-2 116 170 IPR001059 GO:0003746(InterPro)|GO:0006414(InterPro)
Fso1g02005 234 FunFam Elongation factor P 177 234 - -
Fso1g02005 234 Gene3D - 177 234 IPR012340 -
Fso1g02005 234 ProSitePatterns Elongation factor P signature. 199 218 IPR013852 -
Fso1g02005 234 Gene3D - 44 112 IPR014722 -
Fso1g02005 234 SUPERFAMILY Nucleic acid-binding proteins 178 234 IPR012340 -
Fso1g02005 234 SUPERFAMILY Nucleic acid-binding proteins 114 178 IPR012340 -
Fso1g02005 234 Pfam Elongation factor P (EF-P) KOW-like domain 52 109 IPR013185 -
Fso1g02005 234 NCBIfam elongation factor P 52 234 IPR011768 GO:0003746(InterPro)|GO:0005737(InterPro)|GO:0006414(InterPro)
Fso1g02005 234 CDD S1-EF-P-repeat-1 120 175 IPR001059 GO:0003746(InterPro)|GO:0006414(InterPro)
Fso1g02005 234 PANTHER ELONGATION FACTOR P 37 234 IPR020599 GO:0003746(PANTHER)|GO:0005737(PANTHER)
Fso1g02005 234 CDD S1-EF-P-repeat-2 178 233 IPR015365 GO:0005737(InterPro)|GO:0043043(InterPro)
Fso1g02005 234 Pfam Elongation factor P, C-terminal 178 233 IPR015365 GO:0005737(InterPro)|GO:0043043(InterPro)
Fso1g02005 234 Pfam Elongation factor P (EF-P) OB domain 120 170 IPR001059 GO:0003746(InterPro)|GO:0006414(InterPro)
Fso1g02005 234 SUPERFAMILY Translation proteins SH3-like domain 47 110 IPR008991 -
Fso1g02005 234 SMART Elong-fact-P-C-2 178 233 IPR015365 GO:0005737(InterPro)|GO:0043043(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Fso1g02005 K02356 elongation factor P
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
2637650 Fso Fso1g02005 Fso-Chr1:59090596 Fso12g01884 Fso-Chr12:57253972