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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Fso1g02123 ATGGCGATCAAGCTTTACGGTGCCGCTGGCTCGACCTCGACTCTCCGAGTTAAGGCGTGCCTAGCCGAGAAGGACCTCGACTACGAGTTCGTTAACGTTGATATGAGCAAGAAGGAACACAAGAGTCCTCAGTTCCTATCACGTAACCCGTTCGGTCAGGTTCCGGTGTTTGAAGATGGTGATCTCAAGCTTTTCGAATCAAGAGCGATTACGCAATATATAGCTCACACATACGCCGACAAGGGGAACGATTTGATTATCAAGGATCCGAAGAAGATGGCTACATTGGCTGTGTGGATCGAAGTGGAGTCTCAAAAGTTCGATCCAGTGGCTTCAAAATTGGCCTGGGAGCTAGCTTACAAGCCGATGTTCGGTATGACAACCGACGATGCAGTGGTGGAAGAGAACGAGAAGAAAATGGAGCAAGTGCTTGACGTATACGAATCACGATTGTCAGAGAGCAAGTATTTAGGTGGCGATAGCTTCACATTGGCGGATCTCCACCACACCCCGGTGATAATGTACCTGATGGGAACGAAGACGAAGAGGTTGTTTGACGCGCGACCACACGTCAGTGCGTGGGCTGCCAACATCCTGTCTAGGCCTGCATGGTTAAAAGTAGCCTCAACTTAA 633 49.61 MAIKLYGAAGSTSTLRVKACLAEKDLDYEFVNVDMSKKEHKSPQFLSRNPFGQVPVFEDGDLKLFESRAITQYIAHTYADKGNDLIIKDPKKMATLAVWIEVESQKFDPVASKLAWELAYKPMFGMTTDDAVVEENEKKMEQVLDVYESRLSESKYLGGDSFTLADLHHTPVIMYLMGTKTKRLFDARPHVSAWAANILSRPAWLKVAST 210
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Fso1g02123 210 SUPERFAMILY Thioredoxin-like 2 82 IPR036249 -
Fso1g02123 210 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 1 82 IPR004045 -
Fso1g02123 210 SUPERFAMILY GST C-terminal domain-like 84 207 IPR036282 -
Fso1g02123 210 FunFam Glutathione S-transferase F2 2 86 - -
Fso1g02123 210 SFLD Main.5: Phi-like 1 208 - -
Fso1g02123 210 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 89 210 IPR010987 -
Fso1g02123 210 Pfam Glutathione S-transferase, N-terminal domain 1 75 IPR004045 -
Fso1g02123 210 Gene3D Glutaredoxin 1 86 - -
Fso1g02123 210 Pfam Glutathione S-transferase, C-terminal domain 111 202 IPR004046 -
Fso1g02123 210 Gene3D - 89 210 - -
Fso1g02123 210 PANTHER GLUTATHIONE S-TRANSFERASE RHO 1 208 - GO:0004364(PANTHER)|GO:0005737(PANTHER)|GO:0006749(PANTHER)|GO:0043295(PANTHER)
Fso1g02123 210 FunFam Glutathione S-transferase F2 87 208 - -
Fso1g02123 210 CDD GST-C-Phi 91 208 IPR034347 -
Fso1g02123 210 SFLD Main (cytGST) 1 208 - -
Fso1g02123 210 CDD GST-N-Phi 2 76 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Fso1g02123 K00799 glutathione S-transferase [EC:2.5.1.18]
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Event-related genes

Select Gene_1 Gene_2 Event_name
96155 Fso1g02123 Fso2g02703
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Fso Fso-Chr1:61049722 Fso2g02702 Fso-Chr2:63898944 dispersed
Fso Fso-Chr10:54999362 Fso1g02123 Fso-Chr1:61049722 transposed
Fso Fso-Chr1:66987017 Fso1g02123 Fso-Chr1:61049722 transposed
Fso Fso-Chr1:61049722 Fso2g02697 Fso-Chr2:63873249 wgd
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Fso1g00493 . 5 227 Glutathione S-transferase gene family AT1G10370 38.393 4.21e-50 161.0
Fso1g00813 . 7 223 Glutathione S-transferase gene family AT3G09270 45.161 7.79e-63 194.0
Fso1g00814 . 7 217 Glutathione S-transferase gene family AT3G09270 45.024 2.26e-61 190.0
Fso1g02123 ACH 3 208 Glutathione S-transferase gene family AT1G02920 61.65 1.30e-92 268.0
Fso1g02416 . 1 209 Glutathione S-transferase gene family AT5G17220 51.196 7.30e-82 241.0
Fso2g01001 . 1 215 Glutathione S-transferase gene family AT2G02390 49.541 2.58e-71 215.0
Fso2g02415 ACH,WGDA 5 220 Glutathione S-transferase gene family AT3G09270 48.43 1.00e-65 201.0
Fso2g02697 . 1 209 Glutathione S-transferase gene family AT3G62760 47.867 2.43e-62 191.0
Fso2g02698 . 4 211 Glutathione S-transferase gene family AT4G02520 53.846 2.39e-73 219.0
Fso2g02699 . 3 208 Glutathione S-transferase gene family AT1G02920 51.208 8.63e-70 210.0
Fso2g02702 . 54 244 Glutathione S-transferase gene family AT2G47730 57.592 7.06e-76 228.0
Fso2g02703 ACH 3 212 Glutathione S-transferase gene family AT2G02930 54.502 1.14e-79 235.0
Fso2g03036 WGDA 6 220 Glutathione S-transferase gene family AT2G29490 43.981 7.86e-52 165.0
Fso3g01910 . 2 228 Glutathione S-transferase gene family AT5G41210 62.555 9.42e-108 309.0
Fso3g01911 WGDA 120 228 Glutathione S-transferase gene family AT5G41210 58.716 2.31e-39 131.0
Fso3g01913 . 2 245 Glutathione S-transferase gene family AT5G41210 61.224 1.33e-108 311.0
Fso3g01914 . 2 230 Glutathione S-transferase gene family AT5G41210 65.066 4.06e-114 325.0
Fso3g01915 . 2 230 Glutathione S-transferase gene family AT5G41210 60.699 3.48e-105 302.0
Fso3g02319 . 6 235 Glutathione S-transferase gene family AT5G02790 66.957 2.03e-112 320.0
Fso4g00607 . 268 453 Glutathione S-transferase gene family AT5G41240 22.396 8.41e-07 48.5
Fso4g00822 . 267 455 Glutathione S-transferase gene family AT5G41240 26.943 1.64e-09 56.6
Fso5g00529 . 279 441 Glutathione S-transferase gene family AT5G41240 26.59 2.43e-10 56.2
Fso5g01114 . 1 266 Glutathione S-transferase gene family AT1G77290 66.292 9.01e-136 382.0
Fso6g00012 . 4 211 Glutathione S-transferase gene family AT4G02520 51.923 3.21e-69 209.0
Fso6g00818 . 5 219 Glutathione S-transferase gene family AT3G09270 51.613 1.02e-72 218.0
Fso6g00819 . 7 112 Glutathione S-transferase gene family AT2G29420 52.83 6.04e-40 130.0
Fso6g00822 . 4 220 Glutathione S-transferase gene family AT3G09270 50.455 4.76e-69 209.0
Fso6g00823 . 5 219 Glutathione S-transferase gene family AT3G09270 50.23 3.37e-72 217.0
Fso6g00824 ACH,WGDA 7 219 Glutathione S-transferase gene family AT2G29420 47.442 1.86e-71 215.0
Fso6g00827 . 7 219 Glutathione S-transferase gene family AT2G29420 46.512 1.58e-70 213.0
Fso6g00901 . 333 455 Glutathione S-transferase gene family AT5G41240 26.316 2.88e-06 45.4
Fso6g02072 . 4 217 Glutathione S-transferase gene family AT1G10370 48.837 7.85e-69 209.0
Fso6g02074 . 4 225 Glutathione S-transferase gene family AT1G10370 46.875 1.09e-66 204.0
Fso8g01595 . 1 212 Glutathione S-transferase gene family AT1G75270 75.117 7.42e-118 332.0
Fso9g00132 . 1 79 Glutathione S-transferase gene family AT1G59700 55.0 7.45e-23 85.9
Fso9g00133 . 122 209 Glutathione S-transferase gene family AT1G10370 38.636 1.47e-20 81.3
Fso9g00291 . 4 209 Glutathione S-transferase gene family AT1G78380 62.802 8.89e-97 279.0
Fso9g01244 . 272 424 Glutathione S-transferase gene family AT5G41240 27.742 8.47e-12 63.9
Fso9g01347 WGDA 2 230 Glutathione S-transferase gene family AT5G41210 64.629 6.63e-110 314.0
Fso10g00528 . 3 222 Glutathione S-transferase gene family AT1G10370 43.439 1.47e-62 193.0
Fso10g01297 . 8 210 Glutathione S-transferase gene family AT2G29420 48.039 9.18e-67 203.0
Fso10g01638 WGDA 5 212 Glutathione S-transferase gene family AT3G09270 41.346 1.78e-52 167.0
Fso10g01639 . 8 209 Glutathione S-transferase gene family AT2G29420 46.305 4.98e-58 181.0
Fso10g01680 . 1 204 Glutathione S-transferase gene family AT2G30860 70.588 1.76e-109 311.0
Fso10g02609 . 3 222 Glutathione S-transferase gene family AT1G10370 42.081 2.81e-60 187.0
Fso10g03049 . 333 504 Glutathione S-transferase gene family AT5G41240 24.725 5.19e-07 48.1
Fso11g00732 . 267 425 Glutathione S-transferase gene family AT5G41240 30.818 2.84e-13 65.9
Fso11g01884 . 1 219 Glutathione S-transferase gene family AT2G02390 66.667 1.44e-104 299.0
Fso11g02685 . 6 219 Glutathione S-transferase gene family AT2G02390 51.869 1.15e-74 223.0
Fso12g01367 . 325 477 Glutathione S-transferase gene family AT5G41240 25.153 2.57e-06 45.4
Fso13g01693 . 1 216 Glutathione S-transferase gene family AT1G78380 60.731 5.91e-101 290.0
Fso14g00719 . 1 212 Glutathione S-transferase gene family AT1G75270 74.178 1.16e-115 327.0
Fso14g00966 . 267 440 Glutathione S-transferase gene family AT5G41240 28.161 6.18e-12 65.1
Fso15g00043 . 267 419 Glutathione S-transferase gene family AT5G41240 30.719 7.53e-12 62.4
Fso15g00894 . 3 219 Glutathione S-transferase gene family AT1G17180 53.182 1.43e-75 226.0
Fso15g01450 . 272 424 Glutathione S-transferase gene family AT5G41240 28.387 2.74e-10 60.1
Fso15g02506 . 325 424 Glutathione S-transferase gene family AT5G41240 29.0 1.73e-06 45.8
Fso15g02656 . 3 217 Glutathione S-transferase gene family AT1G10370 48.148 1.44e-69 211.0
Fso15g02662 . 5 219 Glutathione S-transferase gene family AT1G10370 38.426 1.13e-52 168.0
Fso15g02663 . 1 226 Glutathione S-transferase gene family AT1G59700 39.207 2.32e-49 160.0
Fso15g02664 . 5 219 Glutathione S-transferase gene family AT1G10370 38.889 2.93e-53 169.0
Fso15g02666 . 5 219 Glutathione S-transferase gene family AT1G10370 38.426 3.07e-54 172.0
Fso15g02667 . 5 197 Glutathione S-transferase gene family AT1G10370 41.237 8.25e-49 158.0
Fso15g02668 . 5 197 Glutathione S-transferase gene family AT1G10370 40.722 6.58e-48 155.0
Fso15g02669 . 3 217 Glutathione S-transferase gene family AT1G10370 37.5 8.90e-47 153.0
Fso15g02671 . 3 224 Glutathione S-transferase gene family AT1G10370 35.874 4.56e-48 156.0
Fso16g01298 WGDA 9 211 Glutathione S-transferase gene family AT2G02390 54.187 4.80e-75 225.0
Fso16g01899 . 262 471 Glutathione S-transferase gene family AT5G41240 29.004 3.11e-11 61.6
Fso17g01233 . 264 503 Glutathione S-transferase gene family AT5G41240 25.681 2.41e-11 63.2
Fso17g01564 . 2 216 Glutathione S-transferase gene family AT1G78380 66.977 4.26e-113 320.0
Fso18g01769 . 5 211 Glutathione S-transferase gene family AT2G02390 52.657 1.48e-73 221.0
Fso18g01770 WGDA 6 211 Glutathione S-transferase gene family AT2G02390 54.854 6.83e-72 216.0
Fso18g01821 . 1 258 Glutathione S-transferase gene family AT5G16710 63.296 6.15e-124 352.0
Fso18g02751 . 59 285 Glutathione S-transferase gene family AT3G55040 67.841 2.49e-111 322.0
Fso10000143.1g00001 . 3 212 Glutathione S-transferase gene family AT2G02930 54.502 1.14e-79 235.0
Fso10000821.1g00001 . 3 211 Glutathione S-transferase gene family AT3G03190 49.524 5.14e-72 216.0