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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Fso1g02189 ATGGCAAAAAAGCTCATCAAATACTTTGTTGTGAACGCTTTTACGGACACCGTGTTTAAAGGAAACCCTGCGGTGGTGTGTTGGTTAGACGATGTAGTGAAAGATGATAAGTGGTTGCAAGCAGTTGCCACTGAATTCAATCTTTCAATGACAAGTTACTTGACCCTGATTGATGTAGATGAGCCTCGATTCCAGCTTCGGTGGTTTGCTCCTATCTCTGAGTTTGAACTTTTTGGTCATCCAACTTTAGCAGCCTCCCGTGTTCTTTTCCGATCAGGCATGGCGGACTCTAACACGATCGAATTCTCAAAGCTTTCTGGAATTTTGACCGCCAAAAGAACGCTGAATGAAAAGGCTGAATGTGAACCACAAGACAGTTTCTACATAGAATTGGATATGCCAGTTGTACTGATTTCAGATTACAATGATCTTGAGGTTTCTACAATTTCAGAAATATTAAACGGTGTTGATGTTGTTGATGTTCTAAAGAAGAATGCATTTGATGACATTATAGTGGTGCTTCCATCCGGAGAAGATGTTGCAACCTTCAAGCCACAATTTAGTAAGATTAAAGAAGCTCCTGGTAGAGCGATAATAATTACAGCACGTGCACCTAATGGGTTGGGGTTTGACTTTTATACTCGTGTTTTCTGCCCTAAATATGGAATTGATGAGGCATCACGTAGAGGTGGCATATTACATGTCCATCTTGATAAGCAGCATCAAAGAGTACGCCTTCGAGGTAAAGCCACAACGGTCATGGAAGGGTATCTTTTGATCTAA 783 41.12 MAKKLIKYFVVNAFTDTVFKGNPAVVCWLDDVVKDDKWLQAVATEFNLSMTSYLTLIDVDEPRFQLRWFAPISEFELFGHPTLAASRVLFRSGMADSNTIEFSKLSGILTAKRTLNEKAECEPQDSFYIELDMPVVLISDYNDLEVSTISEILNGVDVVDVLKKNAFDDIIVVLPSGEDVATFKPQFSKIKEAPGRAIIITARAPNGLGFDFYTRVFCPKYGIDEASRRGGILHVHLDKQHQRVRLRGKATTVMEGYLLI 260
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Fso1g02189 260 Gene3D Diaminopimelate Epimerase; Chain A, domain 1 5 144 - -
Fso1g02189 260 Gene3D Diaminopimelate Epimerase; Chain A, domain 1 145 227 - -
Fso1g02189 260 SUPERFAMILY Diaminopimelate epimerase-like 6 260 - -
Fso1g02189 260 Pfam Phenazine biosynthesis-like protein 11 225 IPR003719 GO:0003824(InterPro)|GO:0009058(InterPro)
Fso1g02189 260 PANTHER PHENAZINE BIOSYNTHESIS PROTEIN 226 260 IPR003719 GO:0003824(InterPro)|GO:0005737(PANTHER)|GO:0009058(InterPro)|GO:0016853(PANTHER)
Fso1g02189 260 PIRSF Ismrse-PhzF 4 227 IPR003719 GO:0003824(InterPro)|GO:0009058(InterPro)
Fso1g02189 260 PIRSF Ismrse-PhzF 224 260 IPR003719 GO:0003824(InterPro)|GO:0009058(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Fso1g02189 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Fso Fso-Chr1:62568944 Fso1g02193 Fso-Chr1:62613633 dispersed
Fso Fso-Chr1:62536257 Fso1g02189 Fso-Chr1:62568944 proximal
Fso Fso-Chr1:62568944 Fso1g02191 Fso-Chr1:62601885 proximal