Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Fso1g02189 | ATGGCAAAAAAGCTCATCAAATACTTTGTTGTGAACGCTTTTACGGACACCGTGTTTAAAGGAAACCCTGCGGTGGTGTGTTGGTTAGACGATGTAGTGAAAGATGATAAGTGGTTGCAAGCAGTTGCCACTGAATTCAATCTTTCAATGACAAGTTACTTGACCCTGATTGATGTAGATGAGCCTCGATTCCAGCTTCGGTGGTTTGCTCCTATCTCTGAGTTTGAACTTTTTGGTCATCCAACTTTAGCAGCCTCCCGTGTTCTTTTCCGATCAGGCATGGCGGACTCTAACACGATCGAATTCTCAAAGCTTTCTGGAATTTTGACCGCCAAAAGAACGCTGAATGAAAAGGCTGAATGTGAACCACAAGACAGTTTCTACATAGAATTGGATATGCCAGTTGTACTGATTTCAGATTACAATGATCTTGAGGTTTCTACAATTTCAGAAATATTAAACGGTGTTGATGTTGTTGATGTTCTAAAGAAGAATGCATTTGATGACATTATAGTGGTGCTTCCATCCGGAGAAGATGTTGCAACCTTCAAGCCACAATTTAGTAAGATTAAAGAAGCTCCTGGTAGAGCGATAATAATTACAGCACGTGCACCTAATGGGTTGGGGTTTGACTTTTATACTCGTGTTTTCTGCCCTAAATATGGAATTGATGAGGCATCACGTAGAGGTGGCATATTACATGTCCATCTTGATAAGCAGCATCAAAGAGTACGCCTTCGAGGTAAAGCCACAACGGTCATGGAAGGGTATCTTTTGATCTAA | 783 | 41.12 | MAKKLIKYFVVNAFTDTVFKGNPAVVCWLDDVVKDDKWLQAVATEFNLSMTSYLTLIDVDEPRFQLRWFAPISEFELFGHPTLAASRVLFRSGMADSNTIEFSKLSGILTAKRTLNEKAECEPQDSFYIELDMPVVLISDYNDLEVSTISEILNGVDVVDVLKKNAFDDIIVVLPSGEDVATFKPQFSKIKEAPGRAIIITARAPNGLGFDFYTRVFCPKYGIDEASRRGGILHVHLDKQHQRVRLRGKATTVMEGYLLI | 260 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Fso1g02189 | 260 | Gene3D | Diaminopimelate Epimerase; Chain A, domain 1 | 5 | 144 | - | - | |
| Fso1g02189 | 260 | Gene3D | Diaminopimelate Epimerase; Chain A, domain 1 | 145 | 227 | - | - | |
| Fso1g02189 | 260 | SUPERFAMILY | Diaminopimelate epimerase-like | 6 | 260 | - | - | |
| Fso1g02189 | 260 | Pfam | Phenazine biosynthesis-like protein | 11 | 225 | IPR003719 | GO:0003824(InterPro)|GO:0009058(InterPro) | |
| Fso1g02189 | 260 | PANTHER | PHENAZINE BIOSYNTHESIS PROTEIN | 226 | 260 | IPR003719 | GO:0003824(InterPro)|GO:0005737(PANTHER)|GO:0009058(InterPro)|GO:0016853(PANTHER) | |
| Fso1g02189 | 260 | PIRSF | Ismrse-PhzF | 4 | 227 | IPR003719 | GO:0003824(InterPro)|GO:0009058(InterPro) | |
| Fso1g02189 | 260 | PIRSF | Ismrse-PhzF | 224 | 260 | IPR003719 | GO:0003824(InterPro)|GO:0009058(InterPro) |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Fso1g02189 | - | - |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Fso | Fso-Chr1:62568944 | Fso1g02193 | Fso-Chr1:62613633 | dispersed | |
| Fso | Fso-Chr1:62536257 | Fso1g02189 | Fso-Chr1:62568944 | proximal | |
| Fso | Fso-Chr1:62568944 | Fso1g02191 | Fso-Chr1:62601885 | proximal |